Endophytic bacteriome data of Litchi chinensis established by metagenomic 16S rRNA gene sequencingMendeley Data
This work reported the diversity profiling and predicted metabolic function of the endophytic bacteriome of lychee (Litchi chinensis S.) cultivated in Dak Lak Province of Vietnam for the first time. Roots of lychee were collected from three different fields in Krong Ana District in Dak Lak. 16S rRNA...
Saved in:
| Main Authors: | , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2025-06-01
|
| Series: | Data in Brief |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340925002768 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1849470663155253248 |
|---|---|
| author | Dinh Sy Nguyen Dinh Minh Tran |
| author_facet | Dinh Sy Nguyen Dinh Minh Tran |
| author_sort | Dinh Sy Nguyen |
| collection | DOAJ |
| description | This work reported the diversity profiling and predicted metabolic function of the endophytic bacteriome of lychee (Litchi chinensis S.) cultivated in Dak Lak Province of Vietnam for the first time. Roots of lychee were collected from three different fields in Krong Ana District in Dak Lak. 16S rRNA primers were used to sequence the metagenomic library. Kraken 2 was used to analyze the taxonomic distribution, while the MetaCyc database was used to predict the metabolic function. We identified 10 phyla, 14 classes, 27 orders, 30 families, and 27 genera of the endophytic bacteria from the sample. Actinomycetota was the most predominant phylum (84.49%), and biosynthesis was the bacteriome's primary function (75.42%). Data provided insight into the taxonomic distribution and metabolic function of lychee endophytic bacteria and might be helpful for the next steps concerning sustainable lychee cultivation using endophytic bacteria. |
| format | Article |
| id | doaj-art-bf880e016fd74148b8bcd85a0e28969d |
| institution | Kabale University |
| issn | 2352-3409 |
| language | English |
| publishDate | 2025-06-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj-art-bf880e016fd74148b8bcd85a0e28969d2025-08-20T03:25:05ZengElsevierData in Brief2352-34092025-06-016011154410.1016/j.dib.2025.111544Endophytic bacteriome data of Litchi chinensis established by metagenomic 16S rRNA gene sequencingMendeley DataDinh Sy Nguyen0Dinh Minh Tran1Institute of Biotechnology and Environment, Tay Nguyen University, Vietnam; Faculty of Natural Science and Technology, Tay Nguyen University, Buon Ma Thuot, Dak Lak 630000, VietnamInstitute of Biotechnology and Environment, Tay Nguyen University, Vietnam; Corresponding author.This work reported the diversity profiling and predicted metabolic function of the endophytic bacteriome of lychee (Litchi chinensis S.) cultivated in Dak Lak Province of Vietnam for the first time. Roots of lychee were collected from three different fields in Krong Ana District in Dak Lak. 16S rRNA primers were used to sequence the metagenomic library. Kraken 2 was used to analyze the taxonomic distribution, while the MetaCyc database was used to predict the metabolic function. We identified 10 phyla, 14 classes, 27 orders, 30 families, and 27 genera of the endophytic bacteria from the sample. Actinomycetota was the most predominant phylum (84.49%), and biosynthesis was the bacteriome's primary function (75.42%). Data provided insight into the taxonomic distribution and metabolic function of lychee endophytic bacteria and might be helpful for the next steps concerning sustainable lychee cultivation using endophytic bacteria.http://www.sciencedirect.com/science/article/pii/S2352340925002768LycheeEndophytic bacteriomeMetagenomic 16S rRNA gene sequencingActinomycetotaBiosynthesis |
| spellingShingle | Dinh Sy Nguyen Dinh Minh Tran Endophytic bacteriome data of Litchi chinensis established by metagenomic 16S rRNA gene sequencingMendeley Data Data in Brief Lychee Endophytic bacteriome Metagenomic 16S rRNA gene sequencing Actinomycetota Biosynthesis |
| title | Endophytic bacteriome data of Litchi chinensis established by metagenomic 16S rRNA gene sequencingMendeley Data |
| title_full | Endophytic bacteriome data of Litchi chinensis established by metagenomic 16S rRNA gene sequencingMendeley Data |
| title_fullStr | Endophytic bacteriome data of Litchi chinensis established by metagenomic 16S rRNA gene sequencingMendeley Data |
| title_full_unstemmed | Endophytic bacteriome data of Litchi chinensis established by metagenomic 16S rRNA gene sequencingMendeley Data |
| title_short | Endophytic bacteriome data of Litchi chinensis established by metagenomic 16S rRNA gene sequencingMendeley Data |
| title_sort | endophytic bacteriome data of litchi chinensis established by metagenomic 16s rrna gene sequencingmendeley data |
| topic | Lychee Endophytic bacteriome Metagenomic 16S rRNA gene sequencing Actinomycetota Biosynthesis |
| url | http://www.sciencedirect.com/science/article/pii/S2352340925002768 |
| work_keys_str_mv | AT dinhsynguyen endophyticbacteriomedataoflitchichinensisestablishedbymetagenomic16srrnagenesequencingmendeleydata AT dinhminhtran endophyticbacteriomedataoflitchichinensisestablishedbymetagenomic16srrnagenesequencingmendeleydata |