Revealing genetic determinants of photosynthesis-related traits in citrus via genome-wide association studies
Photosynthesis-related traits, encompassing aspects such as absorbance, chlorophyll content, fluorescence, quenching ratio of incoming light, and photochemical efficiency, are pivotal characteristics directly related to photosynthesis carbon gain with important implications for overall tree physiolo...
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| Format: | Article |
| Language: | English |
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Maximum Academic Press
2024-01-01
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| Series: | Fruit Research |
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| Online Access: | https://www.maxapress.com/article/doi/10.48130/frures-0024-0013 |
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| author | Xuesong Wang Ryan Traband Yoko Hiraoka Sergio Pietro Ferrante Lei Yu Qiong Jia Sarah Wang Zixian Wang Aleyda Acosta Rangel Tatiane O. Vieira Tracy L. Kahn Mikeal L Roose Louis Santiago Zhenyu Jia |
| author_facet | Xuesong Wang Ryan Traband Yoko Hiraoka Sergio Pietro Ferrante Lei Yu Qiong Jia Sarah Wang Zixian Wang Aleyda Acosta Rangel Tatiane O. Vieira Tracy L. Kahn Mikeal L Roose Louis Santiago Zhenyu Jia |
| author_sort | Xuesong Wang |
| collection | DOAJ |
| description | Photosynthesis-related traits, encompassing aspects such as absorbance, chlorophyll content, fluorescence, quenching ratio of incoming light, and photochemical efficiency, are pivotal characteristics directly related to photosynthesis carbon gain with important implications for overall tree physiology and fruit production. In this study, we conducted an examination of 71 citrus accessions and varieties, utilizing over 56,000 single nucleotide polymorphisms and 37 leaf reflectance parameters. Pairwise correlation analysis revealed clusters of interrelated traits organized into four distinct groups. The observed trait variations were found to have associations with the citrus phylogeny. Through genome-wide association studies, we identified a total of 125 genomic loci and 189 potentially associated genes responsible for the observed trait variations. The potential network and biological pathways influencing the variability of these biophysical variables within the citrus collection are also discussed. |
| format | Article |
| id | doaj-art-bcbb48df5b8f4aeaa69f12be969c0b20 |
| institution | OA Journals |
| issn | 2769-4615 |
| language | English |
| publishDate | 2024-01-01 |
| publisher | Maximum Academic Press |
| record_format | Article |
| series | Fruit Research |
| spelling | doaj-art-bcbb48df5b8f4aeaa69f12be969c0b202025-08-20T02:12:30ZengMaximum Academic PressFruit Research2769-46152024-01-01411810.48130/frures-0024-0013frures-0024-0013Revealing genetic determinants of photosynthesis-related traits in citrus via genome-wide association studiesXuesong Wang0Ryan Traband1Yoko Hiraoka2Sergio Pietro Ferrante3Lei Yu4Qiong Jia5Sarah Wang6Zixian Wang7Aleyda Acosta Rangel8Tatiane O. Vieira9Tracy L. Kahn10Mikeal L Roose11Louis Santiago12Zhenyu Jia13Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USADepartment of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USADepartment of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USADepartment of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USADepartment of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USADepartment of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USADepartment of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USACollege of Letters and Science, University of California, Los Angeles, Los Angeles, CA 90016, USAUniversity of Florida, Institute of Food and Agricultural Sciences, Gulf Coast Research and Education Center, Wimauma, FL 33598, USAUniversidade Estadual do Norte Fluminense Darcy Ribeiro, Laboratório de Ciências Ambientais, Campos dos Goytacazes, RJ 28013-602, BrazilDepartment of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USADepartment of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USADepartment of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USADepartment of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USAPhotosynthesis-related traits, encompassing aspects such as absorbance, chlorophyll content, fluorescence, quenching ratio of incoming light, and photochemical efficiency, are pivotal characteristics directly related to photosynthesis carbon gain with important implications for overall tree physiology and fruit production. In this study, we conducted an examination of 71 citrus accessions and varieties, utilizing over 56,000 single nucleotide polymorphisms and 37 leaf reflectance parameters. Pairwise correlation analysis revealed clusters of interrelated traits organized into four distinct groups. The observed trait variations were found to have associations with the citrus phylogeny. Through genome-wide association studies, we identified a total of 125 genomic loci and 189 potentially associated genes responsible for the observed trait variations. The potential network and biological pathways influencing the variability of these biophysical variables within the citrus collection are also discussed.https://www.maxapress.com/article/doi/10.48130/frures-0024-0013geneticphotosynthesiscitrus |
| spellingShingle | Xuesong Wang Ryan Traband Yoko Hiraoka Sergio Pietro Ferrante Lei Yu Qiong Jia Sarah Wang Zixian Wang Aleyda Acosta Rangel Tatiane O. Vieira Tracy L. Kahn Mikeal L Roose Louis Santiago Zhenyu Jia Revealing genetic determinants of photosynthesis-related traits in citrus via genome-wide association studies Fruit Research genetic photosynthesis citrus |
| title | Revealing genetic determinants of photosynthesis-related traits in citrus via genome-wide association studies |
| title_full | Revealing genetic determinants of photosynthesis-related traits in citrus via genome-wide association studies |
| title_fullStr | Revealing genetic determinants of photosynthesis-related traits in citrus via genome-wide association studies |
| title_full_unstemmed | Revealing genetic determinants of photosynthesis-related traits in citrus via genome-wide association studies |
| title_short | Revealing genetic determinants of photosynthesis-related traits in citrus via genome-wide association studies |
| title_sort | revealing genetic determinants of photosynthesis related traits in citrus via genome wide association studies |
| topic | genetic photosynthesis citrus |
| url | https://www.maxapress.com/article/doi/10.48130/frures-0024-0013 |
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