T-DNAreader: fast and precise identification of T-DNA insertion sites in plant genomes using RNA sequencing data
Abstract Agrobacterium-mediated plant transformation, which enables the delivery of DNA using transfer DNA (T-DNA) binary vectors, is an essential technique in plant research. T-DNAs randomly integrate into the host genome, and multiple T-DNAs can sometimes integrate during a single transformation,...
Saved in:
| Main Authors: | Hongwoo Lee, Pil Joon Seo |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
BMC
2025-07-01
|
| Series: | Genome Biology |
| Subjects: | |
| Online Access: | https://doi.org/10.1186/s13059-025-03655-x |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
-
CacPred: a cascaded convolutional neural network for TF-DNA binding prediction
by: Shuangquan Zhang, et al.
Published: (2025-03-01) -
Protocol for development and use of spike-in control for chromatin immunoprecipitation of chromatin-binding proteins in Schizosaccharomyces pombe
by: Jasbeer S. Khanduja, et al.
Published: (2025-09-01) -
AlleleSeq: analysis of allele‐specific expression and binding in a network framework
by: Joel Rozowsky, et al.
Published: (2011-08-01) -
Late gene regulation by the alternative sigma factors of Chlamydia trachomatis
by: Syed M. A. Rizvi, et al.
Published: (2025-07-01) -
A transcription network underlies the dual genomic coordination of mitochondrial biogenesis
by: Fan Zhang, et al.
Published: (2024-12-01)