Phylosymbiosis of antibiotic resistance genes in pig feces and potential transmission to piggery workers

Animal feces are recognized as reservoirs of antibiotic resistance genes (ARGs) that threaten public health and environmental safety. However, it remains unclear whether livestock breeds affect ARGs in feces and how they are transferred from animals to workers. Here, an approach integrated with meta...

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Bibliographic Details
Main Authors: Xi Bai, Junlong Bi, Anjian Li, Xiangqing Zhu, Zelong Zhao, Hong Hu, Hongbin Pan
Format: Article
Language:English
Published: Elsevier 2025-09-01
Series:Ecotoxicology and Environmental Safety
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Online Access:http://www.sciencedirect.com/science/article/pii/S0147651325012527
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Summary:Animal feces are recognized as reservoirs of antibiotic resistance genes (ARGs) that threaten public health and environmental safety. However, it remains unclear whether livestock breeds affect ARGs in feces and how they are transferred from animals to workers. Here, an approach integrated with metagenomics and whole-genome resequencing was used to study Saba (SB) and Large White (LW) pigs on the same pig farm. Higher abundance of both gut bacterial and viral communities and lower abundance of tetracycline and aminoglycoside resistance genes were observed in SB pigs. Gut bacterial communities control the shape of the antibiotic resistome in pig feces. The co-occurrence network showed a close association between ARGs, mobile genetic elements, and gut microbiota in SB pigs. By integrating whole-genome resequencing, an apparent phylosymbiosis was revealed in the antibiotic resistome in pig feces. The structural equation model revealed that host phylogeny primarily directly controlled the antibiotic resistome in pig feces, with additional indirect effects mediated by gut bacterial communities. The flow of ARGs, including pig feces, sludge, flies, and worker feces, between pig farms was further investigated. The findings revealed a direct contribution of pig feces to the ARGs in worker feces, while flies played only a minor role in the transfer of ARGs to pig workers. These findings are essential for developing effective measures to combat antimicrobial resistance in pigs and potential threats to public health.
ISSN:0147-6513