Beyond Infection: How Antimicrobial Therapies Influence the Urinary Microbiome and Stone Disease

The discovery of a resident urinary microbiome has significantly altered the understanding of urolithiasis, expanding its etiology beyond metabolic and dietary factors to include microbial contributions. This review highlights how specific uropathogens—particularly <i>Proteus mirabilis</i&g...

Full description

Saved in:
Bibliographic Details
Main Authors: Oana Nicu-Canareica, Vlad-Octavian Bolocan, Loredana Sabina Cornelia Manolescu, Petru Armean, Cosmin Medar, Liliana Burlibașa, Maria-Luiza Băean, Viorel Jinga
Format: Article
Language:English
Published: MDPI AG 2025-07-01
Series:Pharmaceuticals
Subjects:
Online Access:https://www.mdpi.com/1424-8247/18/7/1038
Tags: Add Tag
No Tags, Be the first to tag this record!
_version_ 1850072190012096512
author Oana Nicu-Canareica
Vlad-Octavian Bolocan
Loredana Sabina Cornelia Manolescu
Petru Armean
Cosmin Medar
Liliana Burlibașa
Maria-Luiza Băean
Viorel Jinga
author_facet Oana Nicu-Canareica
Vlad-Octavian Bolocan
Loredana Sabina Cornelia Manolescu
Petru Armean
Cosmin Medar
Liliana Burlibașa
Maria-Luiza Băean
Viorel Jinga
author_sort Oana Nicu-Canareica
collection DOAJ
description The discovery of a resident urinary microbiome has significantly altered the understanding of urolithiasis, expanding its etiology beyond metabolic and dietary factors to include microbial contributions. This review highlights how specific uropathogens—particularly <i>Proteus mirabilis</i>, <i>Klebsiella pneumoniae</i>, and <i>Escherichia coli</i>—facilitate stone formation through mechanisms such as urease activity, citrate degradation, urine alkalinization, biofilm development, and inflammatory signaling. We critically examine how antibiotic therapies, while essential for treating urinary tract infections (UTIs), disrupt microbial homeostasis by depleting beneficial taxa like <i>Lactobacillus</i> and enabling colonization by lithogenic and resistant strains. Recurrent or broad-spectrum antibiotic use is linked to persistent dysbiosis and increased risk of stone recurrence. Additionally, this paper explores emerging microbiome-targeted strategies—such as probiotics, prebiotics, bacteriotherapy, and precision antimicrobials—as potential interventions to restore microbial balance and mitigate stone risk. Recognizing the urinary microbiome as a therapeutic target opens new avenues for personalized, microbiota-conscious strategies in the prevention and management of kidney stone disease.
format Article
id doaj-art-b49a2082b1fc404ba9e3cbc08a7b4882
institution DOAJ
issn 1424-8247
language English
publishDate 2025-07-01
publisher MDPI AG
record_format Article
series Pharmaceuticals
spelling doaj-art-b49a2082b1fc404ba9e3cbc08a7b48822025-08-20T02:47:07ZengMDPI AGPharmaceuticals1424-82472025-07-01187103810.3390/ph18071038Beyond Infection: How Antimicrobial Therapies Influence the Urinary Microbiome and Stone DiseaseOana Nicu-Canareica0Vlad-Octavian Bolocan1Loredana Sabina Cornelia Manolescu2Petru Armean3Cosmin Medar4Liliana Burlibașa5Maria-Luiza Băean6Viorel Jinga7Doctoral Program Studies, University of Medicine and Pharmacy “Carol Davila”, 050474 Bucharest, RomaniaDoctoral Program Studies, University of Medicine and Pharmacy “Carol Davila”, 050474 Bucharest, RomaniaDepartment of Fundamental Sciences, Faculty of Midwifery and Nursing, University of Medicine and Pharmacy “Carol Davila”, 050474 Bucharest, RomaniaDiscipline of Public Health and Management, Department of Specific Sciences, Faculty of Midwifery and Nursing, University of Medicine and Pharmacy “Carol Davila”, 050474 Bucharest, RomaniaDepartment of Fundamental Sciences, Faculty of Midwifery and Nursing, University of Medicine and Pharmacy “Carol Davila”, 050474 Bucharest, RomaniaGenetics Department, Faculty of Biology, University of Bucharest, 060101 Bucharest, RomaniaDepartment of Fundamental Sciences, Faculty of Midwifery and Nursing, University of Medicine and Pharmacy “Carol Davila”, 050474 Bucharest, RomaniaDepartment of Urology, Clinical Hospital “Prof. Dr. Theodor Burghele”, Faculty of Medicine, University of Medicine and Pharmacy “Carol Davila”, 050474 Bucharest, RomaniaThe discovery of a resident urinary microbiome has significantly altered the understanding of urolithiasis, expanding its etiology beyond metabolic and dietary factors to include microbial contributions. This review highlights how specific uropathogens—particularly <i>Proteus mirabilis</i>, <i>Klebsiella pneumoniae</i>, and <i>Escherichia coli</i>—facilitate stone formation through mechanisms such as urease activity, citrate degradation, urine alkalinization, biofilm development, and inflammatory signaling. We critically examine how antibiotic therapies, while essential for treating urinary tract infections (UTIs), disrupt microbial homeostasis by depleting beneficial taxa like <i>Lactobacillus</i> and enabling colonization by lithogenic and resistant strains. Recurrent or broad-spectrum antibiotic use is linked to persistent dysbiosis and increased risk of stone recurrence. Additionally, this paper explores emerging microbiome-targeted strategies—such as probiotics, prebiotics, bacteriotherapy, and precision antimicrobials—as potential interventions to restore microbial balance and mitigate stone risk. Recognizing the urinary microbiome as a therapeutic target opens new avenues for personalized, microbiota-conscious strategies in the prevention and management of kidney stone disease.https://www.mdpi.com/1424-8247/18/7/1038urolithiasismicrobiotaantibioticsdysbiosisinfectionprobiotics
spellingShingle Oana Nicu-Canareica
Vlad-Octavian Bolocan
Loredana Sabina Cornelia Manolescu
Petru Armean
Cosmin Medar
Liliana Burlibașa
Maria-Luiza Băean
Viorel Jinga
Beyond Infection: How Antimicrobial Therapies Influence the Urinary Microbiome and Stone Disease
Pharmaceuticals
urolithiasis
microbiota
antibiotics
dysbiosis
infection
probiotics
title Beyond Infection: How Antimicrobial Therapies Influence the Urinary Microbiome and Stone Disease
title_full Beyond Infection: How Antimicrobial Therapies Influence the Urinary Microbiome and Stone Disease
title_fullStr Beyond Infection: How Antimicrobial Therapies Influence the Urinary Microbiome and Stone Disease
title_full_unstemmed Beyond Infection: How Antimicrobial Therapies Influence the Urinary Microbiome and Stone Disease
title_short Beyond Infection: How Antimicrobial Therapies Influence the Urinary Microbiome and Stone Disease
title_sort beyond infection how antimicrobial therapies influence the urinary microbiome and stone disease
topic urolithiasis
microbiota
antibiotics
dysbiosis
infection
probiotics
url https://www.mdpi.com/1424-8247/18/7/1038
work_keys_str_mv AT oananicucanareica beyondinfectionhowantimicrobialtherapiesinfluencetheurinarymicrobiomeandstonedisease
AT vladoctavianbolocan beyondinfectionhowantimicrobialtherapiesinfluencetheurinarymicrobiomeandstonedisease
AT loredanasabinacorneliamanolescu beyondinfectionhowantimicrobialtherapiesinfluencetheurinarymicrobiomeandstonedisease
AT petruarmean beyondinfectionhowantimicrobialtherapiesinfluencetheurinarymicrobiomeandstonedisease
AT cosminmedar beyondinfectionhowantimicrobialtherapiesinfluencetheurinarymicrobiomeandstonedisease
AT lilianaburlibasa beyondinfectionhowantimicrobialtherapiesinfluencetheurinarymicrobiomeandstonedisease
AT marialuizabaean beyondinfectionhowantimicrobialtherapiesinfluencetheurinarymicrobiomeandstonedisease
AT vioreljinga beyondinfectionhowantimicrobialtherapiesinfluencetheurinarymicrobiomeandstonedisease