Designing diverse and high-performance proteins with a large language model in the loop.

We present a protein engineering approach to directed evolution with machine learning that integrates a new semi-supervised neural network fitness prediction model, Seq2Fitness, and an innovative optimization algorithm, biphasic annealing for diverse and adaptive sequence sampling (BADASS) to design...

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Bibliographic Details
Main Authors: Carlos A Gomez-Uribe, Japheth Gado, Meiirbek Islamov
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2025-06-01
Series:PLoS Computational Biology
Online Access:https://doi.org/10.1371/journal.pcbi.1013119
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