The chronODE framework for modelling multi-omic time series with ordinary differential equations and machine learning

Abstract Many genome-wide studies capture isolated moments in cell differentiation or organismal development. Conversely, longitudinal studies provide a more direct way to study these kinetic processes. Here, we present an approach for modeling gene-expression and chromatin kinetics from such studie...

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Bibliographic Details
Main Authors: Beatrice Borsari, Mor Frank, Eve S. Wattenberg, Ke Xu, Susanna X. Liu, Xuezhu Yu, Mark Gerstein
Format: Article
Language:English
Published: Nature Portfolio 2025-08-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-025-61921-9
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