Proteostasis signatures in human diseases.

The protein homeostasis (proteostasis) network maintains the proteome in a functional state. Although this network has been comprehensively mapped, its perturbations in disease remain incompletely characterised. To address this problem, here we define the proteostasis signatures, which represent the...

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Main Authors: Christine M Lim, Michele Vendruscolo
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2025-06-01
Series:PLoS Computational Biology
Online Access:https://doi.org/10.1371/journal.pcbi.1013155
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author Christine M Lim
Michele Vendruscolo
author_facet Christine M Lim
Michele Vendruscolo
author_sort Christine M Lim
collection DOAJ
description The protein homeostasis (proteostasis) network maintains the proteome in a functional state. Although this network has been comprehensively mapped, its perturbations in disease remain incompletely characterised. To address this problem, here we define the proteostasis signatures, which represent the characteristic patterns of change in the proteostasis network associated with disease. We performed a large-scale, pan-disease analysis across 32 human diseases spanning 7 disease types. We first identified unique proteostasis perturbations in specific disease states. We then uncovered distinctive signatures differentiating disease types, pointing to a range of proteostasis mechanisms in disease development. Next, we tracked the temporal evolution of proteostasis signatures, revealing shifts in proteostasis disruption over the course of disease progression. Finally, we demonstrated how smoking, a major risk factor for many diseases, impairs proteostasis in a manner similar to disease, potentially creating a predisposed environment for disease onset. These results illustrate the opportunities offered by the study of human diseases from the perspective of proteostasis signatures.
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spelling doaj-art-a4931ee3a97d44e68288020015a6bbb92025-08-20T03:22:35ZengPublic Library of Science (PLoS)PLoS Computational Biology1553-734X1553-73582025-06-01216e101315510.1371/journal.pcbi.1013155Proteostasis signatures in human diseases.Christine M LimMichele VendruscoloThe protein homeostasis (proteostasis) network maintains the proteome in a functional state. Although this network has been comprehensively mapped, its perturbations in disease remain incompletely characterised. To address this problem, here we define the proteostasis signatures, which represent the characteristic patterns of change in the proteostasis network associated with disease. We performed a large-scale, pan-disease analysis across 32 human diseases spanning 7 disease types. We first identified unique proteostasis perturbations in specific disease states. We then uncovered distinctive signatures differentiating disease types, pointing to a range of proteostasis mechanisms in disease development. Next, we tracked the temporal evolution of proteostasis signatures, revealing shifts in proteostasis disruption over the course of disease progression. Finally, we demonstrated how smoking, a major risk factor for many diseases, impairs proteostasis in a manner similar to disease, potentially creating a predisposed environment for disease onset. These results illustrate the opportunities offered by the study of human diseases from the perspective of proteostasis signatures.https://doi.org/10.1371/journal.pcbi.1013155
spellingShingle Christine M Lim
Michele Vendruscolo
Proteostasis signatures in human diseases.
PLoS Computational Biology
title Proteostasis signatures in human diseases.
title_full Proteostasis signatures in human diseases.
title_fullStr Proteostasis signatures in human diseases.
title_full_unstemmed Proteostasis signatures in human diseases.
title_short Proteostasis signatures in human diseases.
title_sort proteostasis signatures in human diseases
url https://doi.org/10.1371/journal.pcbi.1013155
work_keys_str_mv AT christinemlim proteostasissignaturesinhumandiseases
AT michelevendruscolo proteostasissignaturesinhumandiseases