General encoding of canonical k-mers
To index or compare sequences efficiently, often k-mers, i.e., substrings of fixed length k, are used. For efficient indexing or storage, k-mers are often encoded as integers, e.g., applying some bijective mapping between all possible σk k-mers and the interval [0, σk −1], where σ is the alphabet si...
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| Format: | Article |
| Language: | English |
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Peer Community In
2023-09-01
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| Series: | Peer Community Journal |
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| Online Access: | https://peercommunityjournal.org/articles/10.24072/pcjournal.323/ |
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