AlleleSeq: analysis of allele‐specific expression and binding in a network framework

AlleleSeq: analysis of allele‐specific expression and binding in a network framework

Abstract To study allele‐specific expression (ASE) and binding (ASB), that is, differences between the maternally and paternally derived alleles, we have developed a computational pipeline (AlleleSeq). Our pipeline initially constructs a diploid personal genome sequence (and corresponding personaliz...

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Main Authors: Joel Rozowsky, Alexej Abyzov, Jing Wang, Pedro Alves, Debasish Raha, Arif Harmanci, Jing Leng, Robert Bjornson, Yong Kong, Naoki Kitabayashi, Nitin Bhardwaj, Mark Rubin, Michael Snyder, Mark Gerstein
Format: Article
Language:English
Published: Springer Nature 2011-08-01
Series:Molecular Systems Biology
Subjects:
allele‐specific
ChIP‐Seq
networks
RNA‐Seq
Online Access:https://doi.org/10.1038/msb.2011.54
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