Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea)
Abstract Objectives This genomic sequence for the purple-hinged rock scallop, Crassadoma gigantea, is a substantial improvement over currently available NCBI genomes for the species and will be an important resource for future genomic research, including ongoing and future population genetic studies...
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| Language: | English |
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BMC
2025-05-01
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| Series: | BMC Genomic Data |
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| Online Access: | https://doi.org/10.1186/s12863-025-01330-5 |
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| author | Hayley Goss Paige Miller Susan F. Zaleski Robert J. Miller Donna M. Schroeder Henry M. Page |
| author_facet | Hayley Goss Paige Miller Susan F. Zaleski Robert J. Miller Donna M. Schroeder Henry M. Page |
| author_sort | Hayley Goss |
| collection | DOAJ |
| description | Abstract Objectives This genomic sequence for the purple-hinged rock scallop, Crassadoma gigantea, is a substantial improvement over currently available NCBI genomes for the species and will be an important resource for future genomic research, including ongoing and future population genetic studies. Purple-hinged rock scallops are found along the west coast of North America with a native range from Northern Alaska to Northern Mexico and found to depths of up to ~ 50 m. While not commercially harvested, this species is harvested recreationally and is a candidate of interest for aquaculture and conservation. Data description The draft genome for C. gigantea is 817.3 MB, containing 7,183 scaffolds (contig N50 = 287.9 Kb, scaffold N50 = 965.5 Kb). Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis using the 5295 genes in the mollusca_odb10 database had a 93.3% completeness value (92.7% single, 0.6% duplicated). Repeat elements made up 32.23% of the genome. MetaEuk reference-based discovery identified and annotated 23,409 unique protein sequences. Functional annotation was completed by Pannzer2. This assembly will contribute to the ongoing population genetic research on this species. |
| format | Article |
| id | doaj-art-9ce4ecfdcd6941e59f5d65cbabde4f45 |
| institution | DOAJ |
| issn | 2730-6844 |
| language | English |
| publishDate | 2025-05-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Genomic Data |
| spelling | doaj-art-9ce4ecfdcd6941e59f5d65cbabde4f452025-08-20T03:06:09ZengBMCBMC Genomic Data2730-68442025-05-012611410.1186/s12863-025-01330-5Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea)Hayley Goss0Paige Miller1Susan F. Zaleski2Robert J. Miller3Donna M. Schroeder4Henry M. Page5Marine Science Institute, University of California Santa BarbaraMarine Science Institute, University of California Santa BarbaraBureau of Ocean Energy ManagementMarine Science Institute, University of California Santa BarbaraBureau of Ocean Energy ManagementMarine Science Institute, University of California Santa BarbaraAbstract Objectives This genomic sequence for the purple-hinged rock scallop, Crassadoma gigantea, is a substantial improvement over currently available NCBI genomes for the species and will be an important resource for future genomic research, including ongoing and future population genetic studies. Purple-hinged rock scallops are found along the west coast of North America with a native range from Northern Alaska to Northern Mexico and found to depths of up to ~ 50 m. While not commercially harvested, this species is harvested recreationally and is a candidate of interest for aquaculture and conservation. Data description The draft genome for C. gigantea is 817.3 MB, containing 7,183 scaffolds (contig N50 = 287.9 Kb, scaffold N50 = 965.5 Kb). Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis using the 5295 genes in the mollusca_odb10 database had a 93.3% completeness value (92.7% single, 0.6% duplicated). Repeat elements made up 32.23% of the genome. MetaEuk reference-based discovery identified and annotated 23,409 unique protein sequences. Functional annotation was completed by Pannzer2. This assembly will contribute to the ongoing population genetic research on this species.https://doi.org/10.1186/s12863-025-01330-5Draft genomeGenome assemblyPurple-hinged rock scallopCrassadoma gigantean |
| spellingShingle | Hayley Goss Paige Miller Susan F. Zaleski Robert J. Miller Donna M. Schroeder Henry M. Page Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea) BMC Genomic Data Draft genome Genome assembly Purple-hinged rock scallop Crassadoma gigantean |
| title | Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea) |
| title_full | Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea) |
| title_fullStr | Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea) |
| title_full_unstemmed | Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea) |
| title_short | Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea) |
| title_sort | draft genome assembly for the purple hinged rock scallop crassadoma gigantea |
| topic | Draft genome Genome assembly Purple-hinged rock scallop Crassadoma gigantean |
| url | https://doi.org/10.1186/s12863-025-01330-5 |
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