Time-dependent RNA transcriptional profiling of abomasal mucosa in cattle infected with Ostertagia ostertagi
Abstract In this study, we infected Holstein calves with Ostertagia ostertagi stage 3 larvae (L3) and determined gene expression profiles of abomasal fundic and pyloric mucosa by RNA sequencing (RNA-seq) at 3–5, 7–9, 10, and 21 days post-infection (dpi), which represent late L3 and early L4 (between...
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Nature Portfolio
2025-02-01
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| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-025-04640-6 |
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| author | Clarissa Boschiero Ethiopia Beshah Mariam Bakshi Peter Thompson Xiaoping Zhu George E. Liu Wenbin Tuo |
| author_facet | Clarissa Boschiero Ethiopia Beshah Mariam Bakshi Peter Thompson Xiaoping Zhu George E. Liu Wenbin Tuo |
| author_sort | Clarissa Boschiero |
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| description | Abstract In this study, we infected Holstein calves with Ostertagia ostertagi stage 3 larvae (L3) and determined gene expression profiles of abomasal fundic and pyloric mucosa by RNA sequencing (RNA-seq) at 3–5, 7–9, 10, and 21 days post-infection (dpi), which represent late L3 and early L4 (between 3–5 dpi), mid to late L4 (between 7–9 and 10 dpi) and adult stages (21 dpi) of the parasitic stage. Bioinformatics analyses were performed to profile the transcriptomic changes over time as well as between cattle abomasal tissues. The results will help understand the gastric responses of the host, especially the immune responses, at different phases of early nematode infection. Such an undertaking is crucial for an in-depth comprehension of host responses, where immunologic reagents for cattle are highly limited. The RNA-seq datasets generated in this study provide a vital data resource, allowing for future comparative analyses to similar data resources or using more advanced analytical technologies in mechanisms of host-parasite interactions. |
| format | Article |
| id | doaj-art-994549a0f37a4f0f8d39865595a99ff1 |
| institution | OA Journals |
| issn | 2052-4463 |
| language | English |
| publishDate | 2025-02-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj-art-994549a0f37a4f0f8d39865595a99ff12025-08-20T02:15:17ZengNature PortfolioScientific Data2052-44632025-02-0112111010.1038/s41597-025-04640-6Time-dependent RNA transcriptional profiling of abomasal mucosa in cattle infected with Ostertagia ostertagiClarissa Boschiero0Ethiopia Beshah1Mariam Bakshi2Peter Thompson3Xiaoping Zhu4George E. Liu5Wenbin Tuo6Animal Parasitic Diseases Laboratory, BARC, Agricultural Research Service, USDAAnimal Parasitic Diseases Laboratory, BARC, Agricultural Research Service, USDAAnimal Parasitic Diseases Laboratory, BARC, Agricultural Research Service, USDAAnimal Parasitic Diseases Laboratory, BARC, Agricultural Research Service, USDADepartment of Veterinary Medicine, University of MarylandAnimal Genomics and Improvement Laboratory, BARC, Agricultural Research Service, USDAAnimal Parasitic Diseases Laboratory, BARC, Agricultural Research Service, USDAAbstract In this study, we infected Holstein calves with Ostertagia ostertagi stage 3 larvae (L3) and determined gene expression profiles of abomasal fundic and pyloric mucosa by RNA sequencing (RNA-seq) at 3–5, 7–9, 10, and 21 days post-infection (dpi), which represent late L3 and early L4 (between 3–5 dpi), mid to late L4 (between 7–9 and 10 dpi) and adult stages (21 dpi) of the parasitic stage. Bioinformatics analyses were performed to profile the transcriptomic changes over time as well as between cattle abomasal tissues. The results will help understand the gastric responses of the host, especially the immune responses, at different phases of early nematode infection. Such an undertaking is crucial for an in-depth comprehension of host responses, where immunologic reagents for cattle are highly limited. The RNA-seq datasets generated in this study provide a vital data resource, allowing for future comparative analyses to similar data resources or using more advanced analytical technologies in mechanisms of host-parasite interactions.https://doi.org/10.1038/s41597-025-04640-6 |
| spellingShingle | Clarissa Boschiero Ethiopia Beshah Mariam Bakshi Peter Thompson Xiaoping Zhu George E. Liu Wenbin Tuo Time-dependent RNA transcriptional profiling of abomasal mucosa in cattle infected with Ostertagia ostertagi Scientific Data |
| title | Time-dependent RNA transcriptional profiling of abomasal mucosa in cattle infected with Ostertagia ostertagi |
| title_full | Time-dependent RNA transcriptional profiling of abomasal mucosa in cattle infected with Ostertagia ostertagi |
| title_fullStr | Time-dependent RNA transcriptional profiling of abomasal mucosa in cattle infected with Ostertagia ostertagi |
| title_full_unstemmed | Time-dependent RNA transcriptional profiling of abomasal mucosa in cattle infected with Ostertagia ostertagi |
| title_short | Time-dependent RNA transcriptional profiling of abomasal mucosa in cattle infected with Ostertagia ostertagi |
| title_sort | time dependent rna transcriptional profiling of abomasal mucosa in cattle infected with ostertagia ostertagi |
| url | https://doi.org/10.1038/s41597-025-04640-6 |
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