Conservation of bilaterian genome structure is the exception, not the rule

Abstract Species from diverse animal lineages have conserved groups of orthologous genes together on the same chromosome for over half a billion years since the last common ancestor of bilaterians. Although notable exceptions exist, the stability of chromosome-scale gene linkages has been proposed t...

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Main Authors: Thomas D. Lewin, Isabel Jiah-Yih Liao, Yi-Jyun Luo
Format: Article
Language:English
Published: BMC 2025-08-01
Series:Genome Biology
Subjects:
Online Access:https://doi.org/10.1186/s13059-025-03732-1
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author Thomas D. Lewin
Isabel Jiah-Yih Liao
Yi-Jyun Luo
author_facet Thomas D. Lewin
Isabel Jiah-Yih Liao
Yi-Jyun Luo
author_sort Thomas D. Lewin
collection DOAJ
description Abstract Species from diverse animal lineages have conserved groups of orthologous genes together on the same chromosome for over half a billion years since the last common ancestor of bilaterians. Although notable exceptions exist, the stability of chromosome-scale gene linkages has been proposed to be the norm among animals. Here we test this hypothesis across species from 52 bilaterian classes representing 15 different phyla. Contrary to expectations, we find that cases of genome structure conservation are rare, taxonomically restricted and unrepresentative of the general state of bilaterian genomes. Genome restructuring correlates with increased rates of protein sequence evolution and may be an underappreciated factor driving animal adaptation and diversification.
format Article
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institution Kabale University
issn 1474-760X
language English
publishDate 2025-08-01
publisher BMC
record_format Article
series Genome Biology
spelling doaj-art-98216167c19e4cb7845ff78d377050322025-08-20T04:03:13ZengBMCGenome Biology1474-760X2025-08-0126111210.1186/s13059-025-03732-1Conservation of bilaterian genome structure is the exception, not the ruleThomas D. Lewin0Isabel Jiah-Yih Liao1Yi-Jyun Luo2Biodiversity Research Center, Academia SinicaBiodiversity Research Center, Academia SinicaBiodiversity Research Center, Academia SinicaAbstract Species from diverse animal lineages have conserved groups of orthologous genes together on the same chromosome for over half a billion years since the last common ancestor of bilaterians. Although notable exceptions exist, the stability of chromosome-scale gene linkages has been proposed to be the norm among animals. Here we test this hypothesis across species from 52 bilaterian classes representing 15 different phyla. Contrary to expectations, we find that cases of genome structure conservation are rare, taxonomically restricted and unrepresentative of the general state of bilaterian genomes. Genome restructuring correlates with increased rates of protein sequence evolution and may be an underappreciated factor driving animal adaptation and diversification.https://doi.org/10.1186/s13059-025-03732-1Chromosome fissionGenome evolutionGenome rearrangementSynteny
spellingShingle Thomas D. Lewin
Isabel Jiah-Yih Liao
Yi-Jyun Luo
Conservation of bilaterian genome structure is the exception, not the rule
Genome Biology
Chromosome fission
Genome evolution
Genome rearrangement
Synteny
title Conservation of bilaterian genome structure is the exception, not the rule
title_full Conservation of bilaterian genome structure is the exception, not the rule
title_fullStr Conservation of bilaterian genome structure is the exception, not the rule
title_full_unstemmed Conservation of bilaterian genome structure is the exception, not the rule
title_short Conservation of bilaterian genome structure is the exception, not the rule
title_sort conservation of bilaterian genome structure is the exception not the rule
topic Chromosome fission
Genome evolution
Genome rearrangement
Synteny
url https://doi.org/10.1186/s13059-025-03732-1
work_keys_str_mv AT thomasdlewin conservationofbilateriangenomestructureistheexceptionnottherule
AT isabeljiahyihliao conservationofbilateriangenomestructureistheexceptionnottherule
AT yijyunluo conservationofbilateriangenomestructureistheexceptionnottherule