Bacterial-charged biochar enhances plant growth and mitigates microplastic toxicity by altering microbial communities and soil metabolism

Microplastic (MP) contamination in agricultural soils is an emerging global concern, with levels in China’s paddy soils ranging from 1300 to over 15,000 particles kg−1, and up to 40,000 particles kg−1 in farmland. This pollution threatens sustainable agriculture by impairing plant growth and disrupt...

Full description

Saved in:
Bibliographic Details
Main Authors: Muhammad Afzal, Xiyu Tan, Yihang Ouyang, Yihang Chen, Qihua Liang, Mehmood Jan, Arif Ali Khattak, Xiaolin Wang, Xiaoyuan Chen, Xiaoying Zhang, Zhiyuan Tan
Format: Article
Language:English
Published: Elsevier 2025-09-01
Series:Plant Stress
Subjects:
Online Access:http://www.sciencedirect.com/science/article/pii/S2667064X25001848
Tags: Add Tag
No Tags, Be the first to tag this record!
_version_ 1849228311575658496
author Muhammad Afzal
Xiyu Tan
Yihang Ouyang
Yihang Chen
Qihua Liang
Mehmood Jan
Arif Ali Khattak
Xiaolin Wang
Xiaoyuan Chen
Xiaoying Zhang
Zhiyuan Tan
author_facet Muhammad Afzal
Xiyu Tan
Yihang Ouyang
Yihang Chen
Qihua Liang
Mehmood Jan
Arif Ali Khattak
Xiaolin Wang
Xiaoyuan Chen
Xiaoying Zhang
Zhiyuan Tan
author_sort Muhammad Afzal
collection DOAJ
description Microplastic (MP) contamination in agricultural soils is an emerging global concern, with levels in China’s paddy soils ranging from 1300 to over 15,000 particles kg−1, and up to 40,000 particles kg−1 in farmland. This pollution threatens sustainable agriculture by impairing plant growth and disrupting plant-microbe interactions. This study evaluated the remediation potential of bacteria with MPs (Bac_MP), biochar with MPs (Bcr_MP), and bacteria plus biochar with MPs (BBM) in paddy soils, assessing their effects on rice (Oryza sativa L.) physiology, soil biochemistry, rhizosphere microbiome, and metabolome. Using qPCR, high-throughput sequencing, and untargeted metabolomics, we examined gene expression, microbial diversity, and metabolomic profiles. BBM significantly enhanced plant growth, increasing shoot fresh and dry weights by 115 % and 161 %, respectively, and raised protein content to 39 nmol g⁻¹ fresh weight. It mitigated oxidative stress by reducing malondialdehyde levels and moderately increasing antioxidant enzyme activities. Soil phosphorus availability increased 2.41-fold, with significant improvements in nitrification (p ≤ 0.05). BBM upregulated nitrogen transporter genes OsNTR1.1 and OsNTR1.2 by 13- and 10.5-fold, and phosphorus transporter genes OsPT1 and OsPT8 by 12- and 9-fold. Microbiome and metabolome analyses revealed enrichment of beneficial bacterial and fungal phyla, including Proteobacteria, Firmicutes, Gemmatimonadetes, Ascomycota, and Basidiomycota, along with key metabolites linked to nutrient cycling and stress tolerance. The bacterial genus Bacillus increased in all treatments, with Kaistobacter, Anaerolinea, and Flavisolibacter enriched under BBM. Notably, the fungal genus Humicola increased 41-fold. These findings highlight BBM as a promising strategy for remediating MP-contaminated soils, improving soil fertility, and supporting sustainable agriculture.
format Article
id doaj-art-9769c1b3bb894f81a074ab941fc9f2a7
institution Kabale University
issn 2667-064X
language English
publishDate 2025-09-01
publisher Elsevier
record_format Article
series Plant Stress
spelling doaj-art-9769c1b3bb894f81a074ab941fc9f2a72025-08-23T04:49:27ZengElsevierPlant Stress2667-064X2025-09-011710091610.1016/j.stress.2025.100916Bacterial-charged biochar enhances plant growth and mitigates microplastic toxicity by altering microbial communities and soil metabolismMuhammad Afzal0Xiyu Tan1Yihang Ouyang2Yihang Chen3Qihua Liang4Mehmood Jan5Arif Ali Khattak6Xiaolin Wang7Xiaoyuan Chen8Xiaoying Zhang9Zhiyuan Tan10College of Agriculture, South China Agricultural University, Guangzhou 510642, China; Guangdong Provincial Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northern Region, Shaoguan University, Shaoguan 512005, ChinaCollege of Agriculture, South China Agricultural University, Guangzhou 510642, ChinaCollege of Agriculture, South China Agricultural University, Guangzhou 510642, ChinaCollege of Agriculture, South China Agricultural University, Guangzhou 510642, ChinaCollege of Agriculture, South China Agricultural University, Guangzhou 510642, ChinaCollege of Agriculture, South China Agricultural University, Guangzhou 510642, ChinaCollege of Agriculture, South China Agricultural University, Guangzhou 510642, ChinaCollege of Agriculture, South China Agricultural University, Guangzhou 510642, ChinaGuangdong Provincial Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northern Region, Shaoguan University, Shaoguan 512005, ChinaCollege of Agriculture, South China Agricultural University, Guangzhou 510642, ChinaCollege of Agriculture, South China Agricultural University, Guangzhou 510642, China; Corresponding author.Microplastic (MP) contamination in agricultural soils is an emerging global concern, with levels in China’s paddy soils ranging from 1300 to over 15,000 particles kg−1, and up to 40,000 particles kg−1 in farmland. This pollution threatens sustainable agriculture by impairing plant growth and disrupting plant-microbe interactions. This study evaluated the remediation potential of bacteria with MPs (Bac_MP), biochar with MPs (Bcr_MP), and bacteria plus biochar with MPs (BBM) in paddy soils, assessing their effects on rice (Oryza sativa L.) physiology, soil biochemistry, rhizosphere microbiome, and metabolome. Using qPCR, high-throughput sequencing, and untargeted metabolomics, we examined gene expression, microbial diversity, and metabolomic profiles. BBM significantly enhanced plant growth, increasing shoot fresh and dry weights by 115 % and 161 %, respectively, and raised protein content to 39 nmol g⁻¹ fresh weight. It mitigated oxidative stress by reducing malondialdehyde levels and moderately increasing antioxidant enzyme activities. Soil phosphorus availability increased 2.41-fold, with significant improvements in nitrification (p ≤ 0.05). BBM upregulated nitrogen transporter genes OsNTR1.1 and OsNTR1.2 by 13- and 10.5-fold, and phosphorus transporter genes OsPT1 and OsPT8 by 12- and 9-fold. Microbiome and metabolome analyses revealed enrichment of beneficial bacterial and fungal phyla, including Proteobacteria, Firmicutes, Gemmatimonadetes, Ascomycota, and Basidiomycota, along with key metabolites linked to nutrient cycling and stress tolerance. The bacterial genus Bacillus increased in all treatments, with Kaistobacter, Anaerolinea, and Flavisolibacter enriched under BBM. Notably, the fungal genus Humicola increased 41-fold. These findings highlight BBM as a promising strategy for remediating MP-contaminated soils, improving soil fertility, and supporting sustainable agriculture.http://www.sciencedirect.com/science/article/pii/S2667064X25001848Microbially charged biocharMicroplastic contaminationPaddy soilNitrogen transformationPhosphorus solubilizationRhizosphere microbiome
spellingShingle Muhammad Afzal
Xiyu Tan
Yihang Ouyang
Yihang Chen
Qihua Liang
Mehmood Jan
Arif Ali Khattak
Xiaolin Wang
Xiaoyuan Chen
Xiaoying Zhang
Zhiyuan Tan
Bacterial-charged biochar enhances plant growth and mitigates microplastic toxicity by altering microbial communities and soil metabolism
Plant Stress
Microbially charged biochar
Microplastic contamination
Paddy soil
Nitrogen transformation
Phosphorus solubilization
Rhizosphere microbiome
title Bacterial-charged biochar enhances plant growth and mitigates microplastic toxicity by altering microbial communities and soil metabolism
title_full Bacterial-charged biochar enhances plant growth and mitigates microplastic toxicity by altering microbial communities and soil metabolism
title_fullStr Bacterial-charged biochar enhances plant growth and mitigates microplastic toxicity by altering microbial communities and soil metabolism
title_full_unstemmed Bacterial-charged biochar enhances plant growth and mitigates microplastic toxicity by altering microbial communities and soil metabolism
title_short Bacterial-charged biochar enhances plant growth and mitigates microplastic toxicity by altering microbial communities and soil metabolism
title_sort bacterial charged biochar enhances plant growth and mitigates microplastic toxicity by altering microbial communities and soil metabolism
topic Microbially charged biochar
Microplastic contamination
Paddy soil
Nitrogen transformation
Phosphorus solubilization
Rhizosphere microbiome
url http://www.sciencedirect.com/science/article/pii/S2667064X25001848
work_keys_str_mv AT muhammadafzal bacterialchargedbiocharenhancesplantgrowthandmitigatesmicroplastictoxicitybyalteringmicrobialcommunitiesandsoilmetabolism
AT xiyutan bacterialchargedbiocharenhancesplantgrowthandmitigatesmicroplastictoxicitybyalteringmicrobialcommunitiesandsoilmetabolism
AT yihangouyang bacterialchargedbiocharenhancesplantgrowthandmitigatesmicroplastictoxicitybyalteringmicrobialcommunitiesandsoilmetabolism
AT yihangchen bacterialchargedbiocharenhancesplantgrowthandmitigatesmicroplastictoxicitybyalteringmicrobialcommunitiesandsoilmetabolism
AT qihualiang bacterialchargedbiocharenhancesplantgrowthandmitigatesmicroplastictoxicitybyalteringmicrobialcommunitiesandsoilmetabolism
AT mehmoodjan bacterialchargedbiocharenhancesplantgrowthandmitigatesmicroplastictoxicitybyalteringmicrobialcommunitiesandsoilmetabolism
AT arifalikhattak bacterialchargedbiocharenhancesplantgrowthandmitigatesmicroplastictoxicitybyalteringmicrobialcommunitiesandsoilmetabolism
AT xiaolinwang bacterialchargedbiocharenhancesplantgrowthandmitigatesmicroplastictoxicitybyalteringmicrobialcommunitiesandsoilmetabolism
AT xiaoyuanchen bacterialchargedbiocharenhancesplantgrowthandmitigatesmicroplastictoxicitybyalteringmicrobialcommunitiesandsoilmetabolism
AT xiaoyingzhang bacterialchargedbiocharenhancesplantgrowthandmitigatesmicroplastictoxicitybyalteringmicrobialcommunitiesandsoilmetabolism
AT zhiyuantan bacterialchargedbiocharenhancesplantgrowthandmitigatesmicroplastictoxicitybyalteringmicrobialcommunitiesandsoilmetabolism