Alzheimer-mutant γ-secretase complexes stall amyloid β-peptide production

Missense mutations in the amyloid precursor protein (APP) and presenilin-1 (PSEN1) cause early-onset familial Alzheimer’s disease (FAD) and alter proteolytic production of secreted 38-to-43-residue amyloid β-peptides (Aβ) by the PSEN1-containing γ-secretase complex, ostensibly supporting the amyloid...

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Main Authors: Parnian Arafi, Sujan Devkota, Emily Williams, Masato Maesako, Michael S Wolfe
Format: Article
Language:English
Published: eLife Sciences Publications Ltd 2025-02-01
Series:eLife
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Online Access:https://elifesciences.org/articles/102274
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author Parnian Arafi
Sujan Devkota
Emily Williams
Masato Maesako
Michael S Wolfe
author_facet Parnian Arafi
Sujan Devkota
Emily Williams
Masato Maesako
Michael S Wolfe
author_sort Parnian Arafi
collection DOAJ
description Missense mutations in the amyloid precursor protein (APP) and presenilin-1 (PSEN1) cause early-onset familial Alzheimer’s disease (FAD) and alter proteolytic production of secreted 38-to-43-residue amyloid β-peptides (Aβ) by the PSEN1-containing γ-secretase complex, ostensibly supporting the amyloid hypothesis of pathogenesis. However, proteolysis of APP substrate by γ-secretase is processive, involving initial endoproteolysis to produce long Aβ peptides of 48 or 49 residues followed by carboxypeptidase trimming in mostly tripeptide increments. We recently reported evidence that FAD mutations in APP and PSEN1 cause deficiencies in early steps in processive proteolysis of APP substrate C99 and that this results from stalled γ-secretase enzyme-substrate and/or enzyme-intermediate complexes. These stalled complexes triggered synaptic degeneration in a Caenorhabditis elegans model of FAD independently of Aβ production. Here, we conducted full quantitative analysis of all proteolytic events on APP substrate by γ-secretase with six additional PSEN1 FAD mutations and found that all six are deficient in multiple processing steps. However, only one of these (F386S) was deficient in certain trimming steps but not in endoproteolysis. Fluorescence lifetime imaging microscopy in intact cells revealed that all six PSEN1 FAD mutations lead to stalled γ-secretase enzyme-substrate/intermediate complexes. The F386S mutation, however, does so only in Aβ-rich regions of the cells, not in C99-rich regions, consistent with the deficiencies of this mutant enzyme only in trimming of Aβ intermediates. These findings provide further evidence that FAD mutations lead to stalled and stabilized γ-secretase enzyme-substrate and/or enzyme-intermediate complexes and are consistent with the stalled process rather than the products of γ-secretase proteolysis as the pathogenic trigger.
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spelling doaj-art-916cc4b7e11343349f73ad61d31957a92025-02-11T15:51:10ZengeLife Sciences Publications LtdeLife2050-084X2025-02-011310.7554/eLife.102274Alzheimer-mutant γ-secretase complexes stall amyloid β-peptide productionParnian Arafi0Sujan Devkota1Emily Williams2Masato Maesako3https://orcid.org/0000-0002-1970-2462Michael S Wolfe4https://orcid.org/0000-0002-5721-9092Department of Medicinal Chemistry, University of Kansas, Lawrence, United StatesDepartment of Medicinal Chemistry, University of Kansas, Lawrence, United StatesAlzheimer Research Unit, MassGeneral Institute for Neurodegenerative Disease, Massachusetts General Hospital, Harvard Medical School, Boston, United StatesAlzheimer Research Unit, MassGeneral Institute for Neurodegenerative Disease, Massachusetts General Hospital, Harvard Medical School, Boston, United StatesDepartment of Medicinal Chemistry, University of Kansas, Lawrence, United StatesMissense mutations in the amyloid precursor protein (APP) and presenilin-1 (PSEN1) cause early-onset familial Alzheimer’s disease (FAD) and alter proteolytic production of secreted 38-to-43-residue amyloid β-peptides (Aβ) by the PSEN1-containing γ-secretase complex, ostensibly supporting the amyloid hypothesis of pathogenesis. However, proteolysis of APP substrate by γ-secretase is processive, involving initial endoproteolysis to produce long Aβ peptides of 48 or 49 residues followed by carboxypeptidase trimming in mostly tripeptide increments. We recently reported evidence that FAD mutations in APP and PSEN1 cause deficiencies in early steps in processive proteolysis of APP substrate C99 and that this results from stalled γ-secretase enzyme-substrate and/or enzyme-intermediate complexes. These stalled complexes triggered synaptic degeneration in a Caenorhabditis elegans model of FAD independently of Aβ production. Here, we conducted full quantitative analysis of all proteolytic events on APP substrate by γ-secretase with six additional PSEN1 FAD mutations and found that all six are deficient in multiple processing steps. However, only one of these (F386S) was deficient in certain trimming steps but not in endoproteolysis. Fluorescence lifetime imaging microscopy in intact cells revealed that all six PSEN1 FAD mutations lead to stalled γ-secretase enzyme-substrate/intermediate complexes. The F386S mutation, however, does so only in Aβ-rich regions of the cells, not in C99-rich regions, consistent with the deficiencies of this mutant enzyme only in trimming of Aβ intermediates. These findings provide further evidence that FAD mutations lead to stalled and stabilized γ-secretase enzyme-substrate and/or enzyme-intermediate complexes and are consistent with the stalled process rather than the products of γ-secretase proteolysis as the pathogenic trigger.https://elifesciences.org/articles/102274proteolysissecretasemass spectrometryfluorescence microscopy
spellingShingle Parnian Arafi
Sujan Devkota
Emily Williams
Masato Maesako
Michael S Wolfe
Alzheimer-mutant γ-secretase complexes stall amyloid β-peptide production
eLife
proteolysis
secretase
mass spectrometry
fluorescence microscopy
title Alzheimer-mutant γ-secretase complexes stall amyloid β-peptide production
title_full Alzheimer-mutant γ-secretase complexes stall amyloid β-peptide production
title_fullStr Alzheimer-mutant γ-secretase complexes stall amyloid β-peptide production
title_full_unstemmed Alzheimer-mutant γ-secretase complexes stall amyloid β-peptide production
title_short Alzheimer-mutant γ-secretase complexes stall amyloid β-peptide production
title_sort alzheimer mutant γ secretase complexes stall amyloid β peptide production
topic proteolysis
secretase
mass spectrometry
fluorescence microscopy
url https://elifesciences.org/articles/102274
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AT emilywilliams alzheimermutantgsecretasecomplexesstallamyloidbpeptideproduction
AT masatomaesako alzheimermutantgsecretasecomplexesstallamyloidbpeptideproduction
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