Large-scale phylogenomic insights into the evolution of the Hymenochaetales
The Hymenochaetales is an order with most species as wood-inhabiting fungi that have high phylogenetic complexity and morphological diversity. Species in this order play important roles in forest ecosystems and include wood decomposers, pathogens, and those that form ectomycorrhizal associations. Ho...
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Taylor & Francis Group
2025-04-01
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| Series: | Mycology |
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| Online Access: | https://www.tandfonline.com/doi/10.1080/21501203.2024.2391527 |
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| author | Heng Zhao Fang Wu Sundy Maurice Igor N. Pavlov Konstantin V. Krutovsky Hong-Gao Liu Yuan Yuan Yu-Cheng Dai |
| author_facet | Heng Zhao Fang Wu Sundy Maurice Igor N. Pavlov Konstantin V. Krutovsky Hong-Gao Liu Yuan Yuan Yu-Cheng Dai |
| author_sort | Heng Zhao |
| collection | DOAJ |
| description | The Hymenochaetales is an order with most species as wood-inhabiting fungi that have high phylogenetic complexity and morphological diversity. Species in this order play important roles in forest ecosystems and include wood decomposers, pathogens, and those that form ectomycorrhizal associations. However, we have limited knowledge of the patterns of large-scale evolutionary history of the order. In this study, using 171 genomes, including 113 newly assembled, we reconstructed the phylogenomic relationships, divergence times, biogeographic patterns, morphological evolution of basidiomata, and patterns of speciation/extinction in the Hymenochaetales. The phylogenomic relationships of 12 families within the Hymenochaetales suggested that 10 families can be accepted, and 2 families rejected. Molecular clock dating analyses suggested that the Hymenochaetales possibly started a rapid family-wide and genus-wide radiation during the early Cretaceous to late Jurassic and Cretaceous, respectively. Reconstruction of the ancestral state implied that Hymenochaetales probably originated from the temperate regions of Asia, with the basidiomata of the common ancestor likely being a corticioid species that rapidly transformed between the early Cretaceous and late Jurassic, coinciding with radiations at the family level. Furthermore, we detected a gradually increasing trend of speciation, extinction, and net diversification rates. We provided large-scale genomes of the Hymenochaetales and revealed evolutionary history patterns, which are key to understanding the evolution of fungi. |
| format | Article |
| id | doaj-art-8e31a5b5c5034ad2830968fa5367e68c |
| institution | OA Journals |
| issn | 2150-1203 2150-1211 |
| language | English |
| publishDate | 2025-04-01 |
| publisher | Taylor & Francis Group |
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| series | Mycology |
| spelling | doaj-art-8e31a5b5c5034ad2830968fa5367e68c2025-08-20T02:25:41ZengTaylor & Francis GroupMycology2150-12032150-12112025-04-0116261763410.1080/21501203.2024.2391527Large-scale phylogenomic insights into the evolution of the HymenochaetalesHeng Zhao0Fang Wu1Sundy Maurice2Igor N. Pavlov3Konstantin V. Krutovsky4Hong-Gao Liu5Yuan Yuan6Yu-Cheng Dai7State Key Laboratory of Efficient Production of Forest Resources, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, ChinaState Key Laboratory of Efficient Production of Forest Resources, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, ChinaSection for Genetics and Evolutionary Biology (EVOGENE), Department of Biosciences, University of Oslo, Oslo, NorwayLaboratory of Mycology and Plant Pathology, V. N. Sukachev Institute of Forest, Siberian Branch, Russian Academy of Sciences, Krasnoyarsk, RussiaDepartment of Forest Genetics and Forest Tree Breeding, Georg-August University of Göttingen, Göttingen, GermanyYunnan Key Laboratory of Gastrodia and Fungi Symbiotic Biology, Zhaotong University, Zhaotong, ChinaState Key Laboratory of Efficient Production of Forest Resources, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, ChinaState Key Laboratory of Efficient Production of Forest Resources, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, ChinaThe Hymenochaetales is an order with most species as wood-inhabiting fungi that have high phylogenetic complexity and morphological diversity. Species in this order play important roles in forest ecosystems and include wood decomposers, pathogens, and those that form ectomycorrhizal associations. However, we have limited knowledge of the patterns of large-scale evolutionary history of the order. In this study, using 171 genomes, including 113 newly assembled, we reconstructed the phylogenomic relationships, divergence times, biogeographic patterns, morphological evolution of basidiomata, and patterns of speciation/extinction in the Hymenochaetales. The phylogenomic relationships of 12 families within the Hymenochaetales suggested that 10 families can be accepted, and 2 families rejected. Molecular clock dating analyses suggested that the Hymenochaetales possibly started a rapid family-wide and genus-wide radiation during the early Cretaceous to late Jurassic and Cretaceous, respectively. Reconstruction of the ancestral state implied that Hymenochaetales probably originated from the temperate regions of Asia, with the basidiomata of the common ancestor likely being a corticioid species that rapidly transformed between the early Cretaceous and late Jurassic, coinciding with radiations at the family level. Furthermore, we detected a gradually increasing trend of speciation, extinction, and net diversification rates. We provided large-scale genomes of the Hymenochaetales and revealed evolutionary history patterns, which are key to understanding the evolution of fungi.https://www.tandfonline.com/doi/10.1080/21501203.2024.2391527Ancestral statebiogeographic patternsHymenochaetaceaemolecular clock datingwhite-rot fungiwood-decay fungi |
| spellingShingle | Heng Zhao Fang Wu Sundy Maurice Igor N. Pavlov Konstantin V. Krutovsky Hong-Gao Liu Yuan Yuan Yu-Cheng Dai Large-scale phylogenomic insights into the evolution of the Hymenochaetales Mycology Ancestral state biogeographic patterns Hymenochaetaceae molecular clock dating white-rot fungi wood-decay fungi |
| title | Large-scale phylogenomic insights into the evolution of the Hymenochaetales |
| title_full | Large-scale phylogenomic insights into the evolution of the Hymenochaetales |
| title_fullStr | Large-scale phylogenomic insights into the evolution of the Hymenochaetales |
| title_full_unstemmed | Large-scale phylogenomic insights into the evolution of the Hymenochaetales |
| title_short | Large-scale phylogenomic insights into the evolution of the Hymenochaetales |
| title_sort | large scale phylogenomic insights into the evolution of the hymenochaetales |
| topic | Ancestral state biogeographic patterns Hymenochaetaceae molecular clock dating white-rot fungi wood-decay fungi |
| url | https://www.tandfonline.com/doi/10.1080/21501203.2024.2391527 |
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