Mechanisms and environmental factors shaping the ecosystem of brain macrophages

Brain macrophages encompass two major populations: microglia in the parenchyma and border-associated macrophages (BAMs) in the extra-parenchymal compartments. These cells play crucial roles in maintaining brain homeostasis and immune surveillance. Microglia and BAMs are phenotypically and epigenetic...

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Main Authors: Silvia Penati, Simone Brioschi, Zhangying Cai, Claudia Z. Han, Marco Colonna
Format: Article
Language:English
Published: Frontiers Media S.A. 2025-01-01
Series:Frontiers in Immunology
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Online Access:https://www.frontiersin.org/articles/10.3389/fimmu.2025.1539988/full
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author Silvia Penati
Simone Brioschi
Zhangying Cai
Claudia Z. Han
Claudia Z. Han
Marco Colonna
Marco Colonna
author_facet Silvia Penati
Simone Brioschi
Zhangying Cai
Claudia Z. Han
Claudia Z. Han
Marco Colonna
Marco Colonna
author_sort Silvia Penati
collection DOAJ
description Brain macrophages encompass two major populations: microglia in the parenchyma and border-associated macrophages (BAMs) in the extra-parenchymal compartments. These cells play crucial roles in maintaining brain homeostasis and immune surveillance. Microglia and BAMs are phenotypically and epigenetically distinct and exhibit highly specialized functions tailored to their environmental niches. Intriguingly, recent studies have shown that both microglia and BAMs originate from the same myeloid progenitor during yolk sac hematopoiesis, but their developmental fates diverge within the brain. Several works have partially unveiled the mechanisms orchestrating the development of microglia and BAMs in both mice and humans; however, many questions remain unanswered. Defining the molecular underpinnings controlling the transcriptional and epigenetic programs of microglia and BAMs is one of the upcoming challenges for the field. In this review, we outline current knowledge on ontogeny, phenotypic diversity, and the factors shaping the ecosystem of brain macrophages. We discuss insights garnered from human studies, highlighting similarities and differences compared to mice. Lastly, we address current research gaps and potential future directions in the field. Understanding how brain macrophages communicate with their local environment and how the tissue instructs their developmental trajectories and functional features is essential to fully comprehend brain physiology in homeostasis and disease.
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spelling doaj-art-8cd35821923d4b289d50c00137a200542025-01-24T07:13:31ZengFrontiers Media S.A.Frontiers in Immunology1664-32242025-01-011610.3389/fimmu.2025.15399881539988Mechanisms and environmental factors shaping the ecosystem of brain macrophagesSilvia Penati0Simone Brioschi1Zhangying Cai2Claudia Z. Han3Claudia Z. Han4Marco Colonna5Marco Colonna6Department of Pathology and Immunology, Washington University School of Medicine in Saint Louis, Saint Louis, MO, United StatesDepartment of Pathology and Immunology, Washington University School of Medicine in Saint Louis, Saint Louis, MO, United StatesDepartment of Pathology and Immunology, Washington University School of Medicine in Saint Louis, Saint Louis, MO, United StatesDepartment of Pathology and Immunology, Washington University School of Medicine in Saint Louis, Saint Louis, MO, United StatesBrain Immunology and Glia (BIG) Center, Washington University School of Medicine in Saint Louis, Saint Louis, MO, United StatesDepartment of Pathology and Immunology, Washington University School of Medicine in Saint Louis, Saint Louis, MO, United StatesBrain Immunology and Glia (BIG) Center, Washington University School of Medicine in Saint Louis, Saint Louis, MO, United StatesBrain macrophages encompass two major populations: microglia in the parenchyma and border-associated macrophages (BAMs) in the extra-parenchymal compartments. These cells play crucial roles in maintaining brain homeostasis and immune surveillance. Microglia and BAMs are phenotypically and epigenetically distinct and exhibit highly specialized functions tailored to their environmental niches. Intriguingly, recent studies have shown that both microglia and BAMs originate from the same myeloid progenitor during yolk sac hematopoiesis, but their developmental fates diverge within the brain. Several works have partially unveiled the mechanisms orchestrating the development of microglia and BAMs in both mice and humans; however, many questions remain unanswered. Defining the molecular underpinnings controlling the transcriptional and epigenetic programs of microglia and BAMs is one of the upcoming challenges for the field. In this review, we outline current knowledge on ontogeny, phenotypic diversity, and the factors shaping the ecosystem of brain macrophages. We discuss insights garnered from human studies, highlighting similarities and differences compared to mice. Lastly, we address current research gaps and potential future directions in the field. Understanding how brain macrophages communicate with their local environment and how the tissue instructs their developmental trajectories and functional features is essential to fully comprehend brain physiology in homeostasis and disease.https://www.frontiersin.org/articles/10.3389/fimmu.2025.1539988/fullbrain macrophagesmicrogliaborder-associated-macrophagesontogenyyolk sacbrain development
spellingShingle Silvia Penati
Simone Brioschi
Zhangying Cai
Claudia Z. Han
Claudia Z. Han
Marco Colonna
Marco Colonna
Mechanisms and environmental factors shaping the ecosystem of brain macrophages
Frontiers in Immunology
brain macrophages
microglia
border-associated-macrophages
ontogeny
yolk sac
brain development
title Mechanisms and environmental factors shaping the ecosystem of brain macrophages
title_full Mechanisms and environmental factors shaping the ecosystem of brain macrophages
title_fullStr Mechanisms and environmental factors shaping the ecosystem of brain macrophages
title_full_unstemmed Mechanisms and environmental factors shaping the ecosystem of brain macrophages
title_short Mechanisms and environmental factors shaping the ecosystem of brain macrophages
title_sort mechanisms and environmental factors shaping the ecosystem of brain macrophages
topic brain macrophages
microglia
border-associated-macrophages
ontogeny
yolk sac
brain development
url https://www.frontiersin.org/articles/10.3389/fimmu.2025.1539988/full
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AT claudiazhan mechanismsandenvironmentalfactorsshapingtheecosystemofbrainmacrophages
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AT marcocolonna mechanismsandenvironmentalfactorsshapingtheecosystemofbrainmacrophages
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