Genome sequences and SNP analyses of Corynespora cassiicola from cotton and soybean in the southeastern United States reveal limited diversity.
Corynespora cassiicola attackes diverse agriculturally important plants, including soybean and cotton, in the US. It is a reemerge pathogen on cotton in southeastern US. Whole genome sequences of four cotton and one soybean isolate from Tennessee were used to develop single nucleotide polymorphism m...
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Public Library of Science (PLoS)
2017-01-01
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| Series: | PLoS ONE |
| Online Access: | https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0184908&type=printable |
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| author | Sandesh K Shrestha Kurt Lamour Heather Young-Kelly |
| author_facet | Sandesh K Shrestha Kurt Lamour Heather Young-Kelly |
| author_sort | Sandesh K Shrestha |
| collection | DOAJ |
| description | Corynespora cassiicola attackes diverse agriculturally important plants, including soybean and cotton, in the US. It is a reemerge pathogen on cotton in southeastern US. Whole genome sequences of four cotton and one soybean isolate from Tennessee were used to develop single nucleotide polymorphism markers for cotton isolates. Cotton isolates had little diversity at the genome level and very little differentiation from the soybean isolate. Analysis of 75 isolates from cotton and soybean, using targeted-sequencing of 22 polymorphic SNP sites, revealed eight multi-locus genotypes and it appears a single clonal lineage predominates across the southeastern region. The cotton and soybean genome sequences were significantly different from the public reference genome derived from a rubber isolate and the utility of these novel resources will be discussed. |
| format | Article |
| id | doaj-art-8bf2aebdf27b4d1ba5fc20c3a1897639 |
| institution | DOAJ |
| issn | 1932-6203 |
| language | English |
| publishDate | 2017-01-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| series | PLoS ONE |
| spelling | doaj-art-8bf2aebdf27b4d1ba5fc20c3a18976392025-08-20T03:04:36ZengPublic Library of Science (PLoS)PLoS ONE1932-62032017-01-01129e018490810.1371/journal.pone.0184908Genome sequences and SNP analyses of Corynespora cassiicola from cotton and soybean in the southeastern United States reveal limited diversity.Sandesh K ShresthaKurt LamourHeather Young-KellyCorynespora cassiicola attackes diverse agriculturally important plants, including soybean and cotton, in the US. It is a reemerge pathogen on cotton in southeastern US. Whole genome sequences of four cotton and one soybean isolate from Tennessee were used to develop single nucleotide polymorphism markers for cotton isolates. Cotton isolates had little diversity at the genome level and very little differentiation from the soybean isolate. Analysis of 75 isolates from cotton and soybean, using targeted-sequencing of 22 polymorphic SNP sites, revealed eight multi-locus genotypes and it appears a single clonal lineage predominates across the southeastern region. The cotton and soybean genome sequences were significantly different from the public reference genome derived from a rubber isolate and the utility of these novel resources will be discussed.https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0184908&type=printable |
| spellingShingle | Sandesh K Shrestha Kurt Lamour Heather Young-Kelly Genome sequences and SNP analyses of Corynespora cassiicola from cotton and soybean in the southeastern United States reveal limited diversity. PLoS ONE |
| title | Genome sequences and SNP analyses of Corynespora cassiicola from cotton and soybean in the southeastern United States reveal limited diversity. |
| title_full | Genome sequences and SNP analyses of Corynespora cassiicola from cotton and soybean in the southeastern United States reveal limited diversity. |
| title_fullStr | Genome sequences and SNP analyses of Corynespora cassiicola from cotton and soybean in the southeastern United States reveal limited diversity. |
| title_full_unstemmed | Genome sequences and SNP analyses of Corynespora cassiicola from cotton and soybean in the southeastern United States reveal limited diversity. |
| title_short | Genome sequences and SNP analyses of Corynespora cassiicola from cotton and soybean in the southeastern United States reveal limited diversity. |
| title_sort | genome sequences and snp analyses of corynespora cassiicola from cotton and soybean in the southeastern united states reveal limited diversity |
| url | https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0184908&type=printable |
| work_keys_str_mv | AT sandeshkshrestha genomesequencesandsnpanalysesofcorynesporacassiicolafromcottonandsoybeaninthesoutheasternunitedstatesreveallimiteddiversity AT kurtlamour genomesequencesandsnpanalysesofcorynesporacassiicolafromcottonandsoybeaninthesoutheasternunitedstatesreveallimiteddiversity AT heatheryoungkelly genomesequencesandsnpanalysesofcorynesporacassiicolafromcottonandsoybeaninthesoutheasternunitedstatesreveallimiteddiversity |