Comparative transcriptome analysis of bovine blastocysts reveals specific effects of the oocyte source and the environments during maturation and early embryo development
Abstract Background Although differences between in vivo and in vitro derived bovine blastocysts in terms of global gene expression profiles have been reported, comparative transcriptome analyses specifically addressing the sustained impact of the oocyte source or the in vitro culture environments d...
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2025-07-01
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| Online Access: | https://doi.org/10.1186/s12864-025-11848-8 |
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| author | Mohammad Bozlur Rahman Eva Held-Hoelker Mohammed Saeed-Zidane Franca Rings Dessie Salilew-Wondim Dawit Tesfaye Ahmed Gad Samuel Gebremedhn Ernst Tholen Karl Schellander Christine Große-Brinkhaus Michael Hoelker |
| author_facet | Mohammad Bozlur Rahman Eva Held-Hoelker Mohammed Saeed-Zidane Franca Rings Dessie Salilew-Wondim Dawit Tesfaye Ahmed Gad Samuel Gebremedhn Ernst Tholen Karl Schellander Christine Große-Brinkhaus Michael Hoelker |
| author_sort | Mohammad Bozlur Rahman |
| collection | DOAJ |
| description | Abstract Background Although differences between in vivo and in vitro derived bovine blastocysts in terms of global gene expression profiles have been reported, comparative transcriptome analyses specifically addressing the sustained impact of the oocyte source or the in vitro culture environments during maturation and post-maturation period are remain limited. Therefore, the present study aimed to investigate the specific impacts of oocyte origin and the culture environment during and after maturation on the gene expression signature at blastocyst stage. To achieve this, we utilized our recently developed technique that enables intrafollicular transfer of immature and matured slaughterhouse-derived oocytes into dominant or preovulatory follicles. Results The presents study identified a total of 1052 differentially expressed genes between in vitro and in vivo derived blastocysts, many of which are involved in key pathways related to protein synthesis, protein degradation and cell-cycle regulation. The majority of these genes (n = 913), particularly those associated with “ubiquitin mediated proteolysis”, “proteasome activity” as well as “cell cycle” related pathways, were differentially expressed due to the in vitro environment following oocyte maturation. Moreover, a distinct set of genes (n = 109) including DHCR7, DHCR24, HMGCR, HMGCS1 and SCD5, which are crucial for cholesterol biosynthesis and lipid metabolism, were altered in response to the in vitro environment during oocyte maturation. Notably, the origin of the immature oocyte also appeared to predetermine the later expression outline of a set of genes (n = 28), including DLD and PLAC8, which are implicated in implantation success and calf delivery. Conclusions The present study provides a comprehensive overview of transcriptomic alterations and pathway disruptions resulting from the in vitro environment following oocyte maturation, offering insight into potential mechanisms underlying embryonic genome activation, DNA duplication and appropriate cell cleavage. The differential expression of genes involved in cholesterol biosynthesis and lipid metabolism due to the in vitro maturation environment may contribute to the reduced cryotolerance observed in the resulting blastocysts. Furthermore, dysregulation of specific genes as a consequence of oocyte source has implications for post-implantation developmental competence. Collectively, these findings advance our understanding of the molecular determinants affecting embryonic developmental potential. The expression signature of these pathways could therefore be used to assess the impact of various treatments and culture environments on embryonic development. In addition, the insights gained from this study could inform future strategies to improve the quality of embryos in in vitro production systems through the targeted modulation, either enhancement or inhibition, of specific genes or pathways. |
| format | Article |
| id | doaj-art-8756a8e30e4f4af791ef9d78c8bbce61 |
| institution | DOAJ |
| issn | 1471-2164 |
| language | English |
| publishDate | 2025-07-01 |
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| spelling | doaj-art-8756a8e30e4f4af791ef9d78c8bbce612025-08-20T03:04:17ZengBMCBMC Genomics1471-21642025-07-0126112110.1186/s12864-025-11848-8Comparative transcriptome analysis of bovine blastocysts reveals specific effects of the oocyte source and the environments during maturation and early embryo developmentMohammad Bozlur Rahman0Eva Held-Hoelker1Mohammed Saeed-Zidane2Franca Rings3Dessie Salilew-Wondim4Dawit Tesfaye5Ahmed Gad6Samuel Gebremedhn7Ernst Tholen8Karl Schellander9Christine Große-Brinkhaus10Michael Hoelker11Institute of Animal Sciences, Animal Breeding, University of BonnInstitute of Animal Sciences, Animal Breeding, University of BonnInstitute of Animal Breeding and Husbandry, Molecular Genetics Group, Christian-Albrechts-University KielInstitute of Animal Sciences, Animal Breeding, University of BonnInstitute of Animal Sciences, Animal Breeding, University of BonnDepartment of Biomedical Sciences, Animal Reproduction and Biotechnology Laboratory, Colorado State UniversityDepartment of Biomedical Sciences, Animal Reproduction and Biotechnology Laboratory, Colorado State UniversityInstitute of Animal Sciences, Animal Breeding, University of BonnInstitute of Animal Sciences, Animal Breeding, University of BonnInstitute of Animal Sciences, Animal Breeding, University of BonnInstitute of Animal Sciences, Animal Breeding, University of BonnDepartment of Animal Science, Biotechnology and Reproduction of farm animals, University of GoettingenAbstract Background Although differences between in vivo and in vitro derived bovine blastocysts in terms of global gene expression profiles have been reported, comparative transcriptome analyses specifically addressing the sustained impact of the oocyte source or the in vitro culture environments during maturation and post-maturation period are remain limited. Therefore, the present study aimed to investigate the specific impacts of oocyte origin and the culture environment during and after maturation on the gene expression signature at blastocyst stage. To achieve this, we utilized our recently developed technique that enables intrafollicular transfer of immature and matured slaughterhouse-derived oocytes into dominant or preovulatory follicles. Results The presents study identified a total of 1052 differentially expressed genes between in vitro and in vivo derived blastocysts, many of which are involved in key pathways related to protein synthesis, protein degradation and cell-cycle regulation. The majority of these genes (n = 913), particularly those associated with “ubiquitin mediated proteolysis”, “proteasome activity” as well as “cell cycle” related pathways, were differentially expressed due to the in vitro environment following oocyte maturation. Moreover, a distinct set of genes (n = 109) including DHCR7, DHCR24, HMGCR, HMGCS1 and SCD5, which are crucial for cholesterol biosynthesis and lipid metabolism, were altered in response to the in vitro environment during oocyte maturation. Notably, the origin of the immature oocyte also appeared to predetermine the later expression outline of a set of genes (n = 28), including DLD and PLAC8, which are implicated in implantation success and calf delivery. Conclusions The present study provides a comprehensive overview of transcriptomic alterations and pathway disruptions resulting from the in vitro environment following oocyte maturation, offering insight into potential mechanisms underlying embryonic genome activation, DNA duplication and appropriate cell cleavage. The differential expression of genes involved in cholesterol biosynthesis and lipid metabolism due to the in vitro maturation environment may contribute to the reduced cryotolerance observed in the resulting blastocysts. Furthermore, dysregulation of specific genes as a consequence of oocyte source has implications for post-implantation developmental competence. Collectively, these findings advance our understanding of the molecular determinants affecting embryonic developmental potential. The expression signature of these pathways could therefore be used to assess the impact of various treatments and culture environments on embryonic development. In addition, the insights gained from this study could inform future strategies to improve the quality of embryos in in vitro production systems through the targeted modulation, either enhancement or inhibition, of specific genes or pathways.https://doi.org/10.1186/s12864-025-11848-8IFOTGene expressionEmbryo sourceDevelopmental environment |
| spellingShingle | Mohammad Bozlur Rahman Eva Held-Hoelker Mohammed Saeed-Zidane Franca Rings Dessie Salilew-Wondim Dawit Tesfaye Ahmed Gad Samuel Gebremedhn Ernst Tholen Karl Schellander Christine Große-Brinkhaus Michael Hoelker Comparative transcriptome analysis of bovine blastocysts reveals specific effects of the oocyte source and the environments during maturation and early embryo development BMC Genomics IFOT Gene expression Embryo source Developmental environment |
| title | Comparative transcriptome analysis of bovine blastocysts reveals specific effects of the oocyte source and the environments during maturation and early embryo development |
| title_full | Comparative transcriptome analysis of bovine blastocysts reveals specific effects of the oocyte source and the environments during maturation and early embryo development |
| title_fullStr | Comparative transcriptome analysis of bovine blastocysts reveals specific effects of the oocyte source and the environments during maturation and early embryo development |
| title_full_unstemmed | Comparative transcriptome analysis of bovine blastocysts reveals specific effects of the oocyte source and the environments during maturation and early embryo development |
| title_short | Comparative transcriptome analysis of bovine blastocysts reveals specific effects of the oocyte source and the environments during maturation and early embryo development |
| title_sort | comparative transcriptome analysis of bovine blastocysts reveals specific effects of the oocyte source and the environments during maturation and early embryo development |
| topic | IFOT Gene expression Embryo source Developmental environment |
| url | https://doi.org/10.1186/s12864-025-11848-8 |
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