Identification of SSR Markers for Differentiating Rice (Oryza sativa L.) Varieties Marketed in Turkey
This study was carried out to identify SSR markers for the differentiation and identification of rice cultivars marketed in Turkey between 2016 and 2017. In this study 60 registered orproduction permitted, some local and foreign rice varieties were used as a material. DNA was isolated from single po...
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| Format: | Article |
| Language: | English |
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Ankara University
2020-09-01
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| Series: | Journal of Agricultural Sciences |
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| Online Access: | https://dergipark.org.tr/tr/download/article-file/1262517 |
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| author | NECMI Beser ZEYNEP ÇİSEM Mutafçılar |
| author_facet | NECMI Beser ZEYNEP ÇİSEM Mutafçılar |
| author_sort | NECMI Beser |
| collection | DOAJ |
| description | This study was carried out to identify SSR markers for the differentiation and identification of rice cultivars marketed in Turkey between 2016 and 2017. In this study 60 registered orproduction permitted, some local and foreign rice varieties were used as a material. DNA was isolated from single polished rice kernels for PCR amplification and rice cultivars were genotyped by 50 SSR markers. We found that 45 out of 50 SSR markers produced reproducible and polymorphic alleles. Thirty-six rice varieties had variety specific alleles among 60 rice varieties analysed in the study. This variety specific alleles belong to only one variety and they can be used to identify rice variety among 60 rice varieties studied. Osmancık-97, Cammeo, Ronaldo and Baldo are the most import 4 varieties in Turkish rice production and milled rice market. In this study, it was found that RM152, RM144, RM259 and RM118 SSR markers can be used to differentiate and identify these most important four varieties with different combinations. Collectively, this study provided some variety specific SSR markers that can be used to differentiate and identify rice varieties sold in Turkey. |
| format | Article |
| id | doaj-art-83294c2fc2e44864a6d9be57db0986c7 |
| institution | DOAJ |
| issn | 1300-7580 2148-9297 |
| language | English |
| publishDate | 2020-09-01 |
| publisher | Ankara University |
| record_format | Article |
| series | Journal of Agricultural Sciences |
| spelling | doaj-art-83294c2fc2e44864a6d9be57db0986c72025-08-20T03:07:13ZengAnkara UniversityJournal of Agricultural Sciences1300-75802148-92972020-09-0126335736210.15832/ankutbd.51827645Identification of SSR Markers for Differentiating Rice (Oryza sativa L.) Varieties Marketed in TurkeyNECMI Beser0ZEYNEP ÇİSEM Mutafçılar1TRAKYA ÜNİVERSİTESİ, MÜHENDİSLİK FAKÜLTESİ, GENETİK VE BİYOMÜHENDİSLİK BÖLÜMÜTRAKYA ÜNİVERSİTESİThis study was carried out to identify SSR markers for the differentiation and identification of rice cultivars marketed in Turkey between 2016 and 2017. In this study 60 registered orproduction permitted, some local and foreign rice varieties were used as a material. DNA was isolated from single polished rice kernels for PCR amplification and rice cultivars were genotyped by 50 SSR markers. We found that 45 out of 50 SSR markers produced reproducible and polymorphic alleles. Thirty-six rice varieties had variety specific alleles among 60 rice varieties analysed in the study. This variety specific alleles belong to only one variety and they can be used to identify rice variety among 60 rice varieties studied. Osmancık-97, Cammeo, Ronaldo and Baldo are the most import 4 varieties in Turkish rice production and milled rice market. In this study, it was found that RM152, RM144, RM259 and RM118 SSR markers can be used to differentiate and identify these most important four varieties with different combinations. Collectively, this study provided some variety specific SSR markers that can be used to differentiate and identify rice varieties sold in Turkey.https://dergipark.org.tr/tr/download/article-file/1262517polished ricerice cultivarssr |
| spellingShingle | NECMI Beser ZEYNEP ÇİSEM Mutafçılar Identification of SSR Markers for Differentiating Rice (Oryza sativa L.) Varieties Marketed in Turkey Journal of Agricultural Sciences polished rice rice cultivar ssr |
| title | Identification of SSR Markers for Differentiating Rice (Oryza sativa L.) Varieties Marketed in Turkey |
| title_full | Identification of SSR Markers for Differentiating Rice (Oryza sativa L.) Varieties Marketed in Turkey |
| title_fullStr | Identification of SSR Markers for Differentiating Rice (Oryza sativa L.) Varieties Marketed in Turkey |
| title_full_unstemmed | Identification of SSR Markers for Differentiating Rice (Oryza sativa L.) Varieties Marketed in Turkey |
| title_short | Identification of SSR Markers for Differentiating Rice (Oryza sativa L.) Varieties Marketed in Turkey |
| title_sort | identification of ssr markers for differentiating rice oryza sativa l varieties marketed in turkey |
| topic | polished rice rice cultivar ssr |
| url | https://dergipark.org.tr/tr/download/article-file/1262517 |
| work_keys_str_mv | AT necmibeser identificationofssrmarkersfordifferentiatingriceoryzasativalvarietiesmarketedinturkey AT zeynepcisemmutafcılar identificationofssrmarkersfordifferentiatingriceoryzasativalvarietiesmarketedinturkey |