Genome-wide identification and expression analysis of GDSL esterase/lipase genes in tomato
The GDSL esterase/lipase family contains many functional genes that perform important biological functions in growth and development, morphogenesis, seed oil synthesis, and defense responses in plants. The expression of GDSL esterase/lipase genes can respond to biotic and abiotic stresses. Although...
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KeAi Communications Co., Ltd.
2022-02-01
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| Series: | Journal of Integrative Agriculture |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S209531192063461X |
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| author | Yao-guang SUN Yu-qing HE He-xuan WANG Jing-bin JIANG Huan-huan YANG Xiang-yang XU |
| author_facet | Yao-guang SUN Yu-qing HE He-xuan WANG Jing-bin JIANG Huan-huan YANG Xiang-yang XU |
| author_sort | Yao-guang SUN |
| collection | DOAJ |
| description | The GDSL esterase/lipase family contains many functional genes that perform important biological functions in growth and development, morphogenesis, seed oil synthesis, and defense responses in plants. The expression of GDSL esterase/lipase genes can respond to biotic and abiotic stresses. Although GDSL esterase/lipase family genes have been identified and studied in other plants, they have not been identified and their functions remain unclear in tomato. This study is the first to identify 80 GDSL esterase/lipase family genes in tomato, which were named SlGELP1–80. These genes were mapped to their positions on the chromosomes and their physical and chemical properties, gene structure, phylogenetic relationships, collinear relationships, and cis-acting elements were analyzed. The spatiotemporal expression characteristics of the SlGELP genes in tomato were diverse. In addition, RNA-seq analysis indicated that the expression patterns of the SlGELP genes in tomato differed before and after inoculation with Stemphylium lycopersici. qRT-PCR was used to analyze the expression of five SlGELP genes after treatments with S. lycopersici, salicylic acid and jasmonic acid. Finally, this study was the first to identify and analyze GDSL esterase/lipase family genes in tomato via bioinformatics approaches, and these findings provide new insights for improving the study of plant disease resistance. |
| format | Article |
| id | doaj-art-81b9d96f4e1a48f9ba5456826ca19955 |
| institution | Kabale University |
| issn | 2095-3119 |
| language | English |
| publishDate | 2022-02-01 |
| publisher | KeAi Communications Co., Ltd. |
| record_format | Article |
| series | Journal of Integrative Agriculture |
| spelling | doaj-art-81b9d96f4e1a48f9ba5456826ca199552025-08-20T03:57:03ZengKeAi Communications Co., Ltd.Journal of Integrative Agriculture2095-31192022-02-0121238940610.1016/S2095-3119(20)63461-XGenome-wide identification and expression analysis of GDSL esterase/lipase genes in tomatoYao-guang SUN0Yu-qing HE1He-xuan WANG2Jing-bin JIANG3Huan-huan YANG4Xiang-yang XU5School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, P.R.ChinaSchool of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, P.R.ChinaSchool of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, P.R.ChinaSchool of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, P.R.ChinaCorrespondence YANG Huan-huan; School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, P.R.ChinaCorrespondence XU Xiang-yang, Tel/Fax: +86-451-55190748; School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, P.R.ChinaThe GDSL esterase/lipase family contains many functional genes that perform important biological functions in growth and development, morphogenesis, seed oil synthesis, and defense responses in plants. The expression of GDSL esterase/lipase genes can respond to biotic and abiotic stresses. Although GDSL esterase/lipase family genes have been identified and studied in other plants, they have not been identified and their functions remain unclear in tomato. This study is the first to identify 80 GDSL esterase/lipase family genes in tomato, which were named SlGELP1–80. These genes were mapped to their positions on the chromosomes and their physical and chemical properties, gene structure, phylogenetic relationships, collinear relationships, and cis-acting elements were analyzed. The spatiotemporal expression characteristics of the SlGELP genes in tomato were diverse. In addition, RNA-seq analysis indicated that the expression patterns of the SlGELP genes in tomato differed before and after inoculation with Stemphylium lycopersici. qRT-PCR was used to analyze the expression of five SlGELP genes after treatments with S. lycopersici, salicylic acid and jasmonic acid. Finally, this study was the first to identify and analyze GDSL esterase/lipase family genes in tomato via bioinformatics approaches, and these findings provide new insights for improving the study of plant disease resistance.http://www.sciencedirect.com/science/article/pii/S209531192063461XGDSL esterase/lipasegene family identificationplant disease resistancegray leaf spotSolanum lycopersicum |
| spellingShingle | Yao-guang SUN Yu-qing HE He-xuan WANG Jing-bin JIANG Huan-huan YANG Xiang-yang XU Genome-wide identification and expression analysis of GDSL esterase/lipase genes in tomato Journal of Integrative Agriculture GDSL esterase/lipase gene family identification plant disease resistance gray leaf spot Solanum lycopersicum |
| title | Genome-wide identification and expression analysis of GDSL esterase/lipase genes in tomato |
| title_full | Genome-wide identification and expression analysis of GDSL esterase/lipase genes in tomato |
| title_fullStr | Genome-wide identification and expression analysis of GDSL esterase/lipase genes in tomato |
| title_full_unstemmed | Genome-wide identification and expression analysis of GDSL esterase/lipase genes in tomato |
| title_short | Genome-wide identification and expression analysis of GDSL esterase/lipase genes in tomato |
| title_sort | genome wide identification and expression analysis of gdsl esterase lipase genes in tomato |
| topic | GDSL esterase/lipase gene family identification plant disease resistance gray leaf spot Solanum lycopersicum |
| url | http://www.sciencedirect.com/science/article/pii/S209531192063461X |
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