Chromosome-level genome assembly of soybean aphid
Abstract Soybean aphid (Aphis glycines) is one of the main pests on soybeans, which causes serious damage to the soybean worldwide. The current genome of the soybean aphid is quite fragmented, which has impeded scientific research to some extent. In this study, we assembled a chromosome-level genome...
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| Format: | Article |
| Language: | English |
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Nature Portfolio
2025-03-01
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| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-025-04711-8 |
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| author | Shaolong Qiu Ningning Wu Xiaodong Sun Yongguo Xue Jixing Xia |
| author_facet | Shaolong Qiu Ningning Wu Xiaodong Sun Yongguo Xue Jixing Xia |
| author_sort | Shaolong Qiu |
| collection | DOAJ |
| description | Abstract Soybean aphid (Aphis glycines) is one of the main pests on soybeans, which causes serious damage to the soybean worldwide. The current genome of the soybean aphid is quite fragmented, which has impeded scientific research to some extent. In this study, we assembled a chromosome-level genome of the soybean aphid using MGI short reads, PacBio HiFi long reads and Hi-C reads. The genome sequence was anchored to four pseudo-chromosomes, with a total genome length of 324 Mb and a scaffold N50 length of 88.85 Mb. We evaluated the genome based on insecta_odb10 and the results show it has a completeness of 97.2%. A total of 20,781 protein-coding genes were predicted in the genome, of which 17,183 genes were annotated in at least one protein database. Our work provides a new genomic resource for the soybean aphid study. |
| format | Article |
| id | doaj-art-8104f045ff3046a6a59266534e2a0411 |
| institution | DOAJ |
| issn | 2052-4463 |
| language | English |
| publishDate | 2025-03-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj-art-8104f045ff3046a6a59266534e2a04112025-08-20T03:05:56ZengNature PortfolioScientific Data2052-44632025-03-011211710.1038/s41597-025-04711-8Chromosome-level genome assembly of soybean aphidShaolong Qiu0Ningning Wu1Xiaodong Sun2Yongguo Xue3Jixing Xia4State Key Laboratory of Agricultural and Forestry Biosecurity, MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural UniversityState Key Laboratory of Agricultural and Forestry Biosecurity, MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural UniversityHeilongjiang Province Agro-technical Extension StationInstitute of Soybean Research, Heilongjiang Provincial Academy of Agricultural SciencesState Key Laboratory of Agricultural and Forestry Biosecurity, MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural UniversityAbstract Soybean aphid (Aphis glycines) is one of the main pests on soybeans, which causes serious damage to the soybean worldwide. The current genome of the soybean aphid is quite fragmented, which has impeded scientific research to some extent. In this study, we assembled a chromosome-level genome of the soybean aphid using MGI short reads, PacBio HiFi long reads and Hi-C reads. The genome sequence was anchored to four pseudo-chromosomes, with a total genome length of 324 Mb and a scaffold N50 length of 88.85 Mb. We evaluated the genome based on insecta_odb10 and the results show it has a completeness of 97.2%. A total of 20,781 protein-coding genes were predicted in the genome, of which 17,183 genes were annotated in at least one protein database. Our work provides a new genomic resource for the soybean aphid study.https://doi.org/10.1038/s41597-025-04711-8 |
| spellingShingle | Shaolong Qiu Ningning Wu Xiaodong Sun Yongguo Xue Jixing Xia Chromosome-level genome assembly of soybean aphid Scientific Data |
| title | Chromosome-level genome assembly of soybean aphid |
| title_full | Chromosome-level genome assembly of soybean aphid |
| title_fullStr | Chromosome-level genome assembly of soybean aphid |
| title_full_unstemmed | Chromosome-level genome assembly of soybean aphid |
| title_short | Chromosome-level genome assembly of soybean aphid |
| title_sort | chromosome level genome assembly of soybean aphid |
| url | https://doi.org/10.1038/s41597-025-04711-8 |
| work_keys_str_mv | AT shaolongqiu chromosomelevelgenomeassemblyofsoybeanaphid AT ningningwu chromosomelevelgenomeassemblyofsoybeanaphid AT xiaodongsun chromosomelevelgenomeassemblyofsoybeanaphid AT yongguoxue chromosomelevelgenomeassemblyofsoybeanaphid AT jixingxia chromosomelevelgenomeassemblyofsoybeanaphid |