Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye
Objective: The genus Liquidambar, is one of many woody genera with morphologically similar species in America, Southeast Europe, and Asia and is thought to have existed on Earth for about 65 million years. Liquidambar orientalis (Anatolian sweetgum tree) is distributed in southwestern Türkiye. With...
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| Format: | Article |
| Language: | English |
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Istanbul University Press
2023-08-01
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| Series: | Turkish Journal of Bioscience and Collections |
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| Online Access: | https://cdn.istanbul.edu.tr/file/JTA6CLJ8T5/4E6DFB74E11843B785C65DB86CE82FC9 |
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| author | Taylan Doğaroğlu Evin Günenç Rümeysa Yeşim Manap Vatan Taşkın Belgin Göçmen Taşkın Ersin Doğaç |
| author_facet | Taylan Doğaroğlu Evin Günenç Rümeysa Yeşim Manap Vatan Taşkın Belgin Göçmen Taşkın Ersin Doğaç |
| author_sort | Taylan Doğaroğlu |
| collection | DOAJ |
| description | Objective: The genus Liquidambar, is one of many woody genera with morphologically similar species in America, Southeast Europe, and Asia and is thought to have existed on Earth for about 65 million years. Liquidambar orientalis (Anatolian sweetgum tree) is distributed in southwestern Türkiye. With this study, it was aimed to reveal the sequence differences of the psaA/ycf3 inter-gene space region of chloroplast DNA (cpDNA) in L. orientalis populations for the first time in the scientific literature. Materials and Methods: In addition, the polymorphism levels, and the molecular evolution of the studied gene region of the L. orientalis populations were investigated. 154 samples were collected from 12 different populations belonging to four provinces, Muğla, Burdur, Antalya, and Aydın, and were studied and the psaA/ycf3 gene encoded by chloroplast DNA was analysed by partial base sequence analysis. Results: Haplotype diversity (h) and the average nucleotide diversity (π) values for all populations were found to be 0.52933 ± 0.011, and 0.00086 ± 0.0001, respectively. According to the results of our research, the gene flow level (Nm) among the populations was 1.40. FST values revealed statistically significant genetic differences between the Fethiye-Yanıklar population of Muğla province and other studied populations. Conclusion: According to the results of the study, Fethiye-Yanıklar, Marmaris-National Park, and Fethiye-İnlice locations, where the highest genetic diversities detected among the studied populations, were found to be important in terms of conservation studies. |
| format | Article |
| id | doaj-art-7bb3df829ddb472eb154ac9a002f8a71 |
| institution | OA Journals |
| issn | 2602-4292 |
| language | English |
| publishDate | 2023-08-01 |
| publisher | Istanbul University Press |
| record_format | Article |
| series | Turkish Journal of Bioscience and Collections |
| spelling | doaj-art-7bb3df829ddb472eb154ac9a002f8a712025-08-20T02:31:08ZengIstanbul University PressTurkish Journal of Bioscience and Collections2602-42922023-08-0172455810.26650/tjbc.1327318123456Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in TürkiyeTaylan Doğaroğlu0https://orcid.org/0000-0002-4671-1372Evin Günenç1https://orcid.org/0000-0001-6201-1256Rümeysa Yeşim Manap2https://orcid.org/0000-0003-4975-7234Vatan Taşkın3https://orcid.org/0000-0002-5122-0885Belgin Göçmen Taşkın4https://orcid.org/0000-0003-1239-5751Ersin Doğaç5https://orcid.org/0000-0003-4426-2187Muğla Sıtkı Koçman Üniversitesi, Mugla, TurkiyeMuğla Sıtkı Koçman Üniversitesi, Mugla, TurkiyeMuğla Sıtkı Koçman Üniversitesi, Mugla, TurkiyeMuğla Sıtkı Koçman Üniversitesi, Mugla, TurkiyeMuğla Sıtkı Koçman Üniversitesi, Mugla, TurkiyeMuğla Sıtkı Koçman Üniversitesi, Mugla, TurkiyeObjective: The genus Liquidambar, is one of many woody genera with morphologically similar species in America, Southeast Europe, and Asia and is thought to have existed on Earth for about 65 million years. Liquidambar orientalis (Anatolian sweetgum tree) is distributed in southwestern Türkiye. With this study, it was aimed to reveal the sequence differences of the psaA/ycf3 inter-gene space region of chloroplast DNA (cpDNA) in L. orientalis populations for the first time in the scientific literature. Materials and Methods: In addition, the polymorphism levels, and the molecular evolution of the studied gene region of the L. orientalis populations were investigated. 154 samples were collected from 12 different populations belonging to four provinces, Muğla, Burdur, Antalya, and Aydın, and were studied and the psaA/ycf3 gene encoded by chloroplast DNA was analysed by partial base sequence analysis. Results: Haplotype diversity (h) and the average nucleotide diversity (π) values for all populations were found to be 0.52933 ± 0.011, and 0.00086 ± 0.0001, respectively. According to the results of our research, the gene flow level (Nm) among the populations was 1.40. FST values revealed statistically significant genetic differences between the Fethiye-Yanıklar population of Muğla province and other studied populations. Conclusion: According to the results of the study, Fethiye-Yanıklar, Marmaris-National Park, and Fethiye-İnlice locations, where the highest genetic diversities detected among the studied populations, were found to be important in terms of conservation studies.https://cdn.istanbul.edu.tr/file/JTA6CLJ8T5/4E6DFB74E11843B785C65DB86CE82FC9liquidambarsweetgum treecpdnaconservation genetics |
| spellingShingle | Taylan Doğaroğlu Evin Günenç Rümeysa Yeşim Manap Vatan Taşkın Belgin Göçmen Taşkın Ersin Doğaç Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye Turkish Journal of Bioscience and Collections liquidambar sweetgum tree cpdna conservation genetics |
| title | Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye |
| title_full | Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye |
| title_fullStr | Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye |
| title_full_unstemmed | Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye |
| title_short | Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye |
| title_sort | genetic structure and phylogenetic analysis of liquidambar orientalis mill altingiaceae populations based on non coded psaa ycf3 intergenic region in the chloroplast genome in turkiye |
| topic | liquidambar sweetgum tree cpdna conservation genetics |
| url | https://cdn.istanbul.edu.tr/file/JTA6CLJ8T5/4E6DFB74E11843B785C65DB86CE82FC9 |
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