Identification of Upregulating Genes, Transcription Factors, and miRNAs in Vitiligo. In silico Study
Ahmed Ibrahim AbdElneam,1,2 Mohammed Saleh Al-Dhubaibi,3 Saleh Salem Bahaj,4 Ghada Farouk Mohammed,5 Lina Mohammed Atef5 1Department of Clinical Biochemistry, Department of Basic Medical Sciences, College of Medicine, Shaqra University, Dawadmi, Saudi Arabia; 2Molecular Genetics and Enzymology Depar...
Saved in:
| Main Authors: | , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Dove Medical Press
2024-09-01
|
| Series: | Clinical, Cosmetic and Investigational Dermatology |
| Subjects: | |
| Online Access: | https://www.dovepress.com/identification-of-upregulating-genes-transcription-factors-and-mirnas--peer-reviewed-fulltext-article-CCID |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1850261775094644736 |
|---|---|
| author | AbdElneam AI Al-Dhubaibi MS Bahaj SS Mohammed GF Atef LM |
| author_facet | AbdElneam AI Al-Dhubaibi MS Bahaj SS Mohammed GF Atef LM |
| author_sort | AbdElneam AI |
| collection | DOAJ |
| description | Ahmed Ibrahim AbdElneam,1,2 Mohammed Saleh Al-Dhubaibi,3 Saleh Salem Bahaj,4 Ghada Farouk Mohammed,5 Lina Mohammed Atef5 1Department of Clinical Biochemistry, Department of Basic Medical Sciences, College of Medicine, Shaqra University, Dawadmi, Saudi Arabia; 2Molecular Genetics and Enzymology Department, Human Genetics and Genome Research Institute, National Research Center, Cairo, Egypt; 3Departments of Dermatology, College of Medicine, Shaqra University, Dawadmi, Saudi Arabia; 4Department of Microbiology and Immunology, Faculty of Medicine and Health Sciences, Sana’a University, Sana’a, Yemen; 5Department of Dermatology, Venereology, and Sexology, Faculty of Medicine, Suez Canal University, Ismailia, EgyptCorrespondence: Saleh Salem Bahaj, Department of Microbiology and Immunology, Faculty of Medicine and Health Sciences, Sana’a University, Yemen, Email salehbahaj2025@hotmail.comBackground: Depigmentation of specific areas of the skin is a persistent and long-lasting dermatologic disorder known as vitiligo, stemming from the impairment and disruption of melanocytes both structurally and functionally, leading to the loss of pigmentation in those regions.Aim: Our objective was to identify the pivotal genes and upstream regulators, transcription factors (TFs), microRNAs (miRNAs), and pathways implicated in the pathogenesis of vitiligo.Methods: An integrated analysis was conducted using microarray datasets on vitiligo obtained from the Gene Expression Omnibus (GEO) database. The functional annotation and potential pathways of differentially expressed genes (DEGs) were additionally investigated through Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. Various bioinformatics approaches were utilized, making use of publicly accessible databases to identify appropriate TFs and miRNAs.Results: Our investigation identified TYR, MLANA, TYRP1, PMEL, OCA2, SLC45A2, GPR143, DCT, TRPM1, and EDNRB as the most appropriate genes associated with vitiligo. Our suggestion is that the identified biological processes include developmental pigmentation (GO:0048066) and pigment metabolic processes (GO:0042440) as the most suitable biological processes. In contrast, the KEGG pathways that showed significance in our analysis are Tyrosine metabolism (Path: hsa00350) and Melanogenesis (Path: hsa04916). We hypothesized the involvement of ten TFs and 73 miRNAs in the regulation of genes related to vitiligo.Conclusion: TYR, MLANA, TYRP1, PMEL, OCA2, SLC45A2, GPR143, DCT, TRPM1, and EDNRB are the top ten genes that are pivotal in the progression and exhibition of vitiligo. The biological, cellular, molecular, and KEGG pathways of those genes has an imperative role in the pathogenesis of vitiligo. TFs and miRNAs that interact with this gene are listed, shedding light on the regulatory mechanisms governing the expression of these key genes in vitiligo.Keywords: Vitiligo, miRNAs, transcription factors, microarray, DEGs, GEO |
| format | Article |
| id | doaj-art-7a95b7279ecb472b986b1cb2c183c2bf |
| institution | OA Journals |
| issn | 1178-7015 |
| language | English |
| publishDate | 2024-09-01 |
| publisher | Dove Medical Press |
| record_format | Article |
| series | Clinical, Cosmetic and Investigational Dermatology |
| spelling | doaj-art-7a95b7279ecb472b986b1cb2c183c2bf2025-08-20T01:55:19ZengDove Medical PressClinical, Cosmetic and Investigational Dermatology1178-70152024-09-01Volume 172123213995935Identification of Upregulating Genes, Transcription Factors, and miRNAs in Vitiligo. In silico StudyAbdElneam AIAl-Dhubaibi MSBahaj SSMohammed GFAtef LMAhmed Ibrahim AbdElneam,1,2 Mohammed Saleh Al-Dhubaibi,3 Saleh Salem Bahaj,4 Ghada Farouk Mohammed,5 Lina Mohammed Atef5 1Department of Clinical Biochemistry, Department of Basic Medical Sciences, College of Medicine, Shaqra University, Dawadmi, Saudi Arabia; 2Molecular Genetics and Enzymology Department, Human Genetics and Genome Research Institute, National Research Center, Cairo, Egypt; 3Departments of Dermatology, College of Medicine, Shaqra University, Dawadmi, Saudi Arabia; 4Department of Microbiology and Immunology, Faculty of Medicine and Health Sciences, Sana’a University, Sana’a, Yemen; 5Department of Dermatology, Venereology, and Sexology, Faculty of Medicine, Suez Canal University, Ismailia, EgyptCorrespondence: Saleh Salem Bahaj, Department of Microbiology and Immunology, Faculty of Medicine and Health Sciences, Sana’a University, Yemen, Email salehbahaj2025@hotmail.comBackground: Depigmentation of specific areas of the skin is a persistent and long-lasting dermatologic disorder known as vitiligo, stemming from the impairment and disruption of melanocytes both structurally and functionally, leading to the loss of pigmentation in those regions.Aim: Our objective was to identify the pivotal genes and upstream regulators, transcription factors (TFs), microRNAs (miRNAs), and pathways implicated in the pathogenesis of vitiligo.Methods: An integrated analysis was conducted using microarray datasets on vitiligo obtained from the Gene Expression Omnibus (GEO) database. The functional annotation and potential pathways of differentially expressed genes (DEGs) were additionally investigated through Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. Various bioinformatics approaches were utilized, making use of publicly accessible databases to identify appropriate TFs and miRNAs.Results: Our investigation identified TYR, MLANA, TYRP1, PMEL, OCA2, SLC45A2, GPR143, DCT, TRPM1, and EDNRB as the most appropriate genes associated with vitiligo. Our suggestion is that the identified biological processes include developmental pigmentation (GO:0048066) and pigment metabolic processes (GO:0042440) as the most suitable biological processes. In contrast, the KEGG pathways that showed significance in our analysis are Tyrosine metabolism (Path: hsa00350) and Melanogenesis (Path: hsa04916). We hypothesized the involvement of ten TFs and 73 miRNAs in the regulation of genes related to vitiligo.Conclusion: TYR, MLANA, TYRP1, PMEL, OCA2, SLC45A2, GPR143, DCT, TRPM1, and EDNRB are the top ten genes that are pivotal in the progression and exhibition of vitiligo. The biological, cellular, molecular, and KEGG pathways of those genes has an imperative role in the pathogenesis of vitiligo. TFs and miRNAs that interact with this gene are listed, shedding light on the regulatory mechanisms governing the expression of these key genes in vitiligo.Keywords: Vitiligo, miRNAs, transcription factors, microarray, DEGs, GEOhttps://www.dovepress.com/identification-of-upregulating-genes-transcription-factors-and-mirnas--peer-reviewed-fulltext-article-CCIDvitiligomirnastranscription factorsmicroarraydegsgeo. |
| spellingShingle | AbdElneam AI Al-Dhubaibi MS Bahaj SS Mohammed GF Atef LM Identification of Upregulating Genes, Transcription Factors, and miRNAs in Vitiligo. In silico Study Clinical, Cosmetic and Investigational Dermatology vitiligo mirnas transcription factors microarray degs geo. |
| title | Identification of Upregulating Genes, Transcription Factors, and miRNAs in Vitiligo. In silico Study |
| title_full | Identification of Upregulating Genes, Transcription Factors, and miRNAs in Vitiligo. In silico Study |
| title_fullStr | Identification of Upregulating Genes, Transcription Factors, and miRNAs in Vitiligo. In silico Study |
| title_full_unstemmed | Identification of Upregulating Genes, Transcription Factors, and miRNAs in Vitiligo. In silico Study |
| title_short | Identification of Upregulating Genes, Transcription Factors, and miRNAs in Vitiligo. In silico Study |
| title_sort | identification of upregulating genes transcription factors and mirnas in vitiligo in silico study |
| topic | vitiligo mirnas transcription factors microarray degs geo. |
| url | https://www.dovepress.com/identification-of-upregulating-genes-transcription-factors-and-mirnas--peer-reviewed-fulltext-article-CCID |
| work_keys_str_mv | AT abdelneamai identificationofupregulatinggenestranscriptionfactorsandmirnasinvitiligoinsilicostudy AT aldhubaibims identificationofupregulatinggenestranscriptionfactorsandmirnasinvitiligoinsilicostudy AT bahajss identificationofupregulatinggenestranscriptionfactorsandmirnasinvitiligoinsilicostudy AT mohammedgf identificationofupregulatinggenestranscriptionfactorsandmirnasinvitiligoinsilicostudy AT ateflm identificationofupregulatinggenestranscriptionfactorsandmirnasinvitiligoinsilicostudy |