Genomic perspective on the bacillus causing paratyphoid B fever
Abstract Paratyphoid B fever (PTB) is caused by an invasive lineage (phylogroup 1, PG1) of Salmonella enterica serotype Paratyphi B (SPB). However, little was known about the global population structure, geographic distribution, and evolution of this pathogen. Here, we report a whole-genome analysis...
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Nature Portfolio
2024-12-01
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| Series: | Nature Communications |
| Online Access: | https://doi.org/10.1038/s41467-024-54418-4 |
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| author | Jane Hawkey Lise Frézal Alicia Tran Dien Anna Zhukova Derek Brown Marie Anne Chattaway Sandra Simon Hidemasa Izumiya Patricia I. Fields Niall De Lappe Lidia Kaftyreva Xuebin Xu Junko Isobe Dominique Clermont Elisabeth Njamkepo Yukihiro Akeda Sylvie Issenhuth-Jeanjean Mariia Makarova Yanan Wang Martin Hunt Brent M. Jenkins Magali Ravel Véronique Guibert Estelle Serre Zoya Matveeva Laëtitia Fabre Martin Cormican Min Yue Baoli Zhu Masatomo Morita Zamin Iqbal Carolina Silva Nodari Maria Pardos de la Gandara François-Xavier Weill |
| author_facet | Jane Hawkey Lise Frézal Alicia Tran Dien Anna Zhukova Derek Brown Marie Anne Chattaway Sandra Simon Hidemasa Izumiya Patricia I. Fields Niall De Lappe Lidia Kaftyreva Xuebin Xu Junko Isobe Dominique Clermont Elisabeth Njamkepo Yukihiro Akeda Sylvie Issenhuth-Jeanjean Mariia Makarova Yanan Wang Martin Hunt Brent M. Jenkins Magali Ravel Véronique Guibert Estelle Serre Zoya Matveeva Laëtitia Fabre Martin Cormican Min Yue Baoli Zhu Masatomo Morita Zamin Iqbal Carolina Silva Nodari Maria Pardos de la Gandara François-Xavier Weill |
| author_sort | Jane Hawkey |
| collection | DOAJ |
| description | Abstract Paratyphoid B fever (PTB) is caused by an invasive lineage (phylogroup 1, PG1) of Salmonella enterica serotype Paratyphi B (SPB). However, little was known about the global population structure, geographic distribution, and evolution of this pathogen. Here, we report a whole-genome analysis of 568 historical and contemporary SPB PG1 isolates, obtained globally, between 1898 and 2021. We show that this pathogen existed in the 13th century, subsequently diversifying into 11 lineages and 38 genotypes with strong phylogeographic patterns. Following its discovery in 1896, it circulated across Europe until the 1970s, after which it was mostly reimported into Europe from South America, the Middle East, South Asia, and North Africa. Antimicrobial resistance recently emerged in various genotypes of SPB PG1, mostly through mutations of the quinolone-resistance-determining regions of gyrA and gyrB. This study provides an unprecedented insight into SPB PG1 and essential genomic tools for identifying and tracking this pathogen, thereby facilitating the global genomic surveillance of PTB. |
| format | Article |
| id | doaj-art-7956e3cfa6a345ad937be87fbbff7d31 |
| institution | OA Journals |
| issn | 2041-1723 |
| language | English |
| publishDate | 2024-12-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Nature Communications |
| spelling | doaj-art-7956e3cfa6a345ad937be87fbbff7d312025-08-20T02:37:57ZengNature PortfolioNature Communications2041-17232024-12-0115111710.1038/s41467-024-54418-4Genomic perspective on the bacillus causing paratyphoid B feverJane Hawkey0Lise Frézal1Alicia Tran Dien2Anna Zhukova3Derek Brown4Marie Anne Chattaway5Sandra Simon6Hidemasa Izumiya7Patricia I. Fields8Niall De Lappe9Lidia Kaftyreva10Xuebin Xu11Junko Isobe12Dominique Clermont13Elisabeth Njamkepo14Yukihiro Akeda15Sylvie Issenhuth-Jeanjean16Mariia Makarova17Yanan Wang18Martin Hunt19Brent M. Jenkins20Magali Ravel21Véronique Guibert22Estelle Serre23Zoya Matveeva24Laëtitia Fabre25Martin Cormican26Min Yue27Baoli Zhu28Masatomo Morita29Zamin Iqbal30Carolina Silva Nodari31Maria Pardos de la Gandara32François-Xavier Weill33Department of Infectious Diseases, School of Translational Medicine, Monash UniversityInstitut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériquesInstitut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériquesInstitut Pasteur, Université Paris Cité, Bioinformatics and Biostatistics HubScottish Microbiology Reference Laboratories (SMiRL)Gastrointestinal Bacteria Reference Unit (GBRU), United Kingdom Health Security AgencyUnit of Enteropathogenic Bacteria and Legionella (FG11)/National Reference Centre for Salmonella and Other Bacterial Enteric Pathogens, Robert Koch-InstituteDepartment of Bacteriology I, National Institute of Infectious DiseasesDivision of Foodborne, Waterborne and Environmental Diseases, Centers for Disease Control and PreventionNational Salmonella, Shigella and Listeria Reference Laboratory, Galway University HospitalsPasteur Institute of St PetersburgDepartment of Microbiology, Shanghai Municipal Centre for Disease Control and PreventionDepartment of Bacteriology, Toyama Institute of HealthInstitut Pasteur, Université Paris Cité, Collection of Institut Pasteur (CIP)Institut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériquesDepartment of Bacteriology I, National Institute of Infectious DiseasesInstitut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériquesPasteur Institute of St PetersburgInternational Joint Research Centre for National Animal Immunology, College of Veterinary Medicine, Henan Agricultural UniversityEuropean Molecular Biology Laboratory, European Bioinformatics InstituteDivision of Foodborne, Waterborne and Environmental Diseases, Centers for Disease Control and PreventionInstitut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériquesInstitut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériquesInstitut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériquesPasteur Institute of St PetersburgInstitut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériquesNational Salmonella, Shigella and Listeria Reference Laboratory, Galway University HospitalsDepartment of Veterinary Medicine, Zhejiang University College of Animal SciencesCAS Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences (CAS)Department of Bacteriology I, National Institute of Infectious DiseasesEuropean Molecular Biology Laboratory, European Bioinformatics InstituteInstitut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériquesInstitut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériquesInstitut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériquesAbstract Paratyphoid B fever (PTB) is caused by an invasive lineage (phylogroup 1, PG1) of Salmonella enterica serotype Paratyphi B (SPB). However, little was known about the global population structure, geographic distribution, and evolution of this pathogen. Here, we report a whole-genome analysis of 568 historical and contemporary SPB PG1 isolates, obtained globally, between 1898 and 2021. We show that this pathogen existed in the 13th century, subsequently diversifying into 11 lineages and 38 genotypes with strong phylogeographic patterns. Following its discovery in 1896, it circulated across Europe until the 1970s, after which it was mostly reimported into Europe from South America, the Middle East, South Asia, and North Africa. Antimicrobial resistance recently emerged in various genotypes of SPB PG1, mostly through mutations of the quinolone-resistance-determining regions of gyrA and gyrB. This study provides an unprecedented insight into SPB PG1 and essential genomic tools for identifying and tracking this pathogen, thereby facilitating the global genomic surveillance of PTB.https://doi.org/10.1038/s41467-024-54418-4 |
| spellingShingle | Jane Hawkey Lise Frézal Alicia Tran Dien Anna Zhukova Derek Brown Marie Anne Chattaway Sandra Simon Hidemasa Izumiya Patricia I. Fields Niall De Lappe Lidia Kaftyreva Xuebin Xu Junko Isobe Dominique Clermont Elisabeth Njamkepo Yukihiro Akeda Sylvie Issenhuth-Jeanjean Mariia Makarova Yanan Wang Martin Hunt Brent M. Jenkins Magali Ravel Véronique Guibert Estelle Serre Zoya Matveeva Laëtitia Fabre Martin Cormican Min Yue Baoli Zhu Masatomo Morita Zamin Iqbal Carolina Silva Nodari Maria Pardos de la Gandara François-Xavier Weill Genomic perspective on the bacillus causing paratyphoid B fever Nature Communications |
| title | Genomic perspective on the bacillus causing paratyphoid B fever |
| title_full | Genomic perspective on the bacillus causing paratyphoid B fever |
| title_fullStr | Genomic perspective on the bacillus causing paratyphoid B fever |
| title_full_unstemmed | Genomic perspective on the bacillus causing paratyphoid B fever |
| title_short | Genomic perspective on the bacillus causing paratyphoid B fever |
| title_sort | genomic perspective on the bacillus causing paratyphoid b fever |
| url | https://doi.org/10.1038/s41467-024-54418-4 |
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