Target gene screening and validation for RNAi-based suppression of the microsporidian parasite Vairimorpha (=Nosema) ceranae in honeybees

Abstract The microsporidian Vairimorpha (=Nosema) ceranae is a major pathogen affecting honeybee health worldwide, yet safe and effective control strategies remain elusive. RNA interference (RNAi) using double-stranded RNA (dsRNA) has emerged as a promising strategy for species-specific suppression...

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Main Authors: Sooho Lim, Hyeonha Yoo, Giyoun Han, Woojin Kim, Minlee Kim
Format: Article
Language:English
Published: SpringerOpen 2025-08-01
Series:Chemical and Biological Technologies in Agriculture
Subjects:
Online Access:https://doi.org/10.1186/s40538-025-00831-w
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author Sooho Lim
Hyeonha Yoo
Giyoun Han
Woojin Kim
Minlee Kim
author_facet Sooho Lim
Hyeonha Yoo
Giyoun Han
Woojin Kim
Minlee Kim
author_sort Sooho Lim
collection DOAJ
description Abstract The microsporidian Vairimorpha (=Nosema) ceranae is a major pathogen affecting honeybee health worldwide, yet safe and effective control strategies remain elusive. RNA interference (RNAi) using double-stranded RNA (dsRNA) has emerged as a promising strategy for species-specific suppression with minimal environmental impact, but effective target selection and mechanistic validation remain key challenges. Here, we screened 11 dsRNAs targeting V. ceranae genes and identified three potent targets (swp25, metap2, and spp). Among them, dsRNA-swp25 exhibited the most pronounced suppression efficacy, outperforming previously validated targets. qRT-PCR analysis confirmed significant post-transcriptional gene silencing, while spore load and midgut infection area were markedly reduced in bees treated with dsRNA-swp25. Furthermore, fluorescence imaging demonstrated that Cy3-labeled dsRNA was directly internalized by V. ceranae spores in a time-dependent manner without host mediation. Collectively, these findings highlight swp25 as a high-impact RNAi target and offer mechanistic insights into pathogen-directed RNAi responsiveness. This work advances the development of practical, environmentally sustainable RNAi-based strategies for apicultural disease management. Graphical Abstract
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institution Kabale University
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series Chemical and Biological Technologies in Agriculture
spelling doaj-art-7483a33cf650495f8664988330c5239c2025-08-20T03:44:00ZengSpringerOpenChemical and Biological Technologies in Agriculture2196-56412025-08-0112111310.1186/s40538-025-00831-wTarget gene screening and validation for RNAi-based suppression of the microsporidian parasite Vairimorpha (=Nosema) ceranae in honeybeesSooho Lim0Hyeonha Yoo1Giyoun Han2Woojin Kim3Minlee Kim4R&D Center, Genolution Inc.R&D Center, Genolution Inc.R&D Center, Genolution Inc.R&D Center, Genolution Inc.R&D Center, Genolution Inc.Abstract The microsporidian Vairimorpha (=Nosema) ceranae is a major pathogen affecting honeybee health worldwide, yet safe and effective control strategies remain elusive. RNA interference (RNAi) using double-stranded RNA (dsRNA) has emerged as a promising strategy for species-specific suppression with minimal environmental impact, but effective target selection and mechanistic validation remain key challenges. Here, we screened 11 dsRNAs targeting V. ceranae genes and identified three potent targets (swp25, metap2, and spp). Among them, dsRNA-swp25 exhibited the most pronounced suppression efficacy, outperforming previously validated targets. qRT-PCR analysis confirmed significant post-transcriptional gene silencing, while spore load and midgut infection area were markedly reduced in bees treated with dsRNA-swp25. Furthermore, fluorescence imaging demonstrated that Cy3-labeled dsRNA was directly internalized by V. ceranae spores in a time-dependent manner without host mediation. Collectively, these findings highlight swp25 as a high-impact RNAi target and offer mechanistic insights into pathogen-directed RNAi responsiveness. This work advances the development of practical, environmentally sustainable RNAi-based strategies for apicultural disease management. Graphical Abstracthttps://doi.org/10.1186/s40538-025-00831-wHoneybeeVairimorpha ceranaeNosemosisRNAiBiological controlPathogen uptake
spellingShingle Sooho Lim
Hyeonha Yoo
Giyoun Han
Woojin Kim
Minlee Kim
Target gene screening and validation for RNAi-based suppression of the microsporidian parasite Vairimorpha (=Nosema) ceranae in honeybees
Chemical and Biological Technologies in Agriculture
Honeybee
Vairimorpha ceranae
Nosemosis
RNAi
Biological control
Pathogen uptake
title Target gene screening and validation for RNAi-based suppression of the microsporidian parasite Vairimorpha (=Nosema) ceranae in honeybees
title_full Target gene screening and validation for RNAi-based suppression of the microsporidian parasite Vairimorpha (=Nosema) ceranae in honeybees
title_fullStr Target gene screening and validation for RNAi-based suppression of the microsporidian parasite Vairimorpha (=Nosema) ceranae in honeybees
title_full_unstemmed Target gene screening and validation for RNAi-based suppression of the microsporidian parasite Vairimorpha (=Nosema) ceranae in honeybees
title_short Target gene screening and validation for RNAi-based suppression of the microsporidian parasite Vairimorpha (=Nosema) ceranae in honeybees
title_sort target gene screening and validation for rnai based suppression of the microsporidian parasite vairimorpha nosema ceranae in honeybees
topic Honeybee
Vairimorpha ceranae
Nosemosis
RNAi
Biological control
Pathogen uptake
url https://doi.org/10.1186/s40538-025-00831-w
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