Use of next-generation sequencing in genomic studies of polyploid crops: cotton as an example
Next-generation sequencing (NGS) technologies provide enormous power and new potential to access the complex polyploid genomes and transcriptomes of major crops, including cotton. This article summarises the applications of NGS in cotton genomic studies, including genome sequencing and resequencing,...
Saved in:
| Main Authors: | , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Zhejiang University Press
2014-07-01
|
| Series: | 浙江大学学报. 农业与生命科学版 |
| Subjects: | |
| Online Access: | https://www.academax.com/doi/10.3785/j.issn.1008-9209.2014.04.092 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1849412844652593152 |
|---|---|
| author | Zhu Qianhao Danny Llewellyn Iain Wilson |
| author_facet | Zhu Qianhao Danny Llewellyn Iain Wilson |
| author_sort | Zhu Qianhao |
| collection | DOAJ |
| description | Next-generation sequencing (NGS) technologies provide enormous power and new potential to access the complex polyploid genomes and transcriptomes of major crops, including cotton. This article summarises the applications of NGS in cotton genomic studies, including genome sequencing and resequencing, transcriptomic analysis, small RNA sequencing and miRNA identification, and identification of single nucleotide polymorphisms. NGS has rapidly accelerated genomic studies in cotton and will further expand our understanding of the evolution and polyploidisation of cotton at the species level as well as our understanding of the biology of the development of the unique seed trichomes that characterise the commercial textile fibres produced by some members of the Gossypium genus. Realisation of substantial impacts on applied cotton genetics and breeding will largely depend on the formulation of novel applications of NGS and the development of handy bioinformatic tools for dealing with and interpretation of the vast amounts of data generated by this technology. |
| format | Article |
| id | doaj-art-73b9b652e7b64028b74e02ac82c4fa7c |
| institution | Kabale University |
| issn | 1008-9209 2097-5155 |
| language | English |
| publishDate | 2014-07-01 |
| publisher | Zhejiang University Press |
| record_format | Article |
| series | 浙江大学学报. 农业与生命科学版 |
| spelling | doaj-art-73b9b652e7b64028b74e02ac82c4fa7c2025-08-20T03:34:18ZengZhejiang University Press浙江大学学报. 农业与生命科学版1008-92092097-51552014-07-014035536910.3785/j.issn.1008-9209.2014.04.09210089209Use of next-generation sequencing in genomic studies of polyploid crops: cotton as an exampleZhu QianhaoDanny LlewellynIain WilsonNext-generation sequencing (NGS) technologies provide enormous power and new potential to access the complex polyploid genomes and transcriptomes of major crops, including cotton. This article summarises the applications of NGS in cotton genomic studies, including genome sequencing and resequencing, transcriptomic analysis, small RNA sequencing and miRNA identification, and identification of single nucleotide polymorphisms. NGS has rapidly accelerated genomic studies in cotton and will further expand our understanding of the evolution and polyploidisation of cotton at the species level as well as our understanding of the biology of the development of the unique seed trichomes that characterise the commercial textile fibres produced by some members of the Gossypium genus. Realisation of substantial impacts on applied cotton genetics and breeding will largely depend on the formulation of novel applications of NGS and the development of handy bioinformatic tools for dealing with and interpretation of the vast amounts of data generated by this technology.https://www.academax.com/doi/10.3785/j.issn.1008-9209.2014.04.092next-generation sequencing technologypolyploidtranscriptomenon-coding RNAssingle nucleotide polymorphismgenotyping-by-sequencing |
| spellingShingle | Zhu Qianhao Danny Llewellyn Iain Wilson Use of next-generation sequencing in genomic studies of polyploid crops: cotton as an example 浙江大学学报. 农业与生命科学版 next-generation sequencing technology polyploid transcriptome non-coding RNAs single nucleotide polymorphism genotyping-by-sequencing |
| title | Use of next-generation sequencing in genomic studies of polyploid crops: cotton as an example |
| title_full | Use of next-generation sequencing in genomic studies of polyploid crops: cotton as an example |
| title_fullStr | Use of next-generation sequencing in genomic studies of polyploid crops: cotton as an example |
| title_full_unstemmed | Use of next-generation sequencing in genomic studies of polyploid crops: cotton as an example |
| title_short | Use of next-generation sequencing in genomic studies of polyploid crops: cotton as an example |
| title_sort | use of next generation sequencing in genomic studies of polyploid crops cotton as an example |
| topic | next-generation sequencing technology polyploid transcriptome non-coding RNAs single nucleotide polymorphism genotyping-by-sequencing |
| url | https://www.academax.com/doi/10.3785/j.issn.1008-9209.2014.04.092 |
| work_keys_str_mv | AT zhuqianhao useofnextgenerationsequencingingenomicstudiesofpolyploidcropscottonasanexample AT dannyllewellyn useofnextgenerationsequencingingenomicstudiesofpolyploidcropscottonasanexample AT iainwilson useofnextgenerationsequencingingenomicstudiesofpolyploidcropscottonasanexample |