Genome-wide transcriptome analysis and drug target discovery reveal key genes and pathways in thyroid cancer metastasis

IntroductionMetastasis is the major cause of thyroid cancer morbidity and mortality. However, the mechanisms are still poorly understood. MethodsWe performed genome-wide transcriptome analysis comparing gene expression profile of metastatic thyroid cancer cells (Met) with primary tumor cells establi...

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Main Authors: Minjing Zou, Amal Qattan, Monther Al-Alwan, Hazem Ghebeh, Naif Binjumah, Latifa Al-Haj, Khalid S. A. Khabar, Abdulmohsen Altaweel, Falah Almohanna, Abdullah M. Assiri, Abdelilah Aboussekhra, Ali S. Alzahrani, Yufei Shi
Format: Article
Language:English
Published: Frontiers Media S.A. 2025-02-01
Series:Frontiers in Endocrinology
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Online Access:https://www.frontiersin.org/articles/10.3389/fendo.2025.1514264/full
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author Minjing Zou
Amal Qattan
Monther Al-Alwan
Hazem Ghebeh
Naif Binjumah
Latifa Al-Haj
Khalid S. A. Khabar
Abdulmohsen Altaweel
Falah Almohanna
Abdullah M. Assiri
Abdelilah Aboussekhra
Ali S. Alzahrani
Ali S. Alzahrani
Yufei Shi
author_facet Minjing Zou
Amal Qattan
Monther Al-Alwan
Hazem Ghebeh
Naif Binjumah
Latifa Al-Haj
Khalid S. A. Khabar
Abdulmohsen Altaweel
Falah Almohanna
Abdullah M. Assiri
Abdelilah Aboussekhra
Ali S. Alzahrani
Ali S. Alzahrani
Yufei Shi
author_sort Minjing Zou
collection DOAJ
description IntroductionMetastasis is the major cause of thyroid cancer morbidity and mortality. However, the mechanisms are still poorly understood. MethodsWe performed genome-wide transcriptome analysis comparing gene expression profile of metastatic thyroid cancer cells (Met) with primary tumor cells established from transgenic mouse models of papillary thyroid cancer (PTC), follicular thyroid cancer (FTC), poorly differentiated thyroid cancer (PDTC), and anaplastic thyroid cancer (ATC).ResultsGenes involved in tumor microenvironment (TME), inflammation, and immune escape were significantly overexpressed in Met cells. Notably, IL-6-mediated inflammatory and PD-L1 pathways were highly active in Met cells with increased secretion of pro-inflammatory and pro-metastatic cytokines such as CCL2, CCL11, IL5, IL6, and CXCL5. Furthermore, Met cells showed robust overexpression of Tbxas1, a thromboxane A synthase 1 gene that catalyzes the conversion of prostaglandin H2 to thromboxane A2 (TXA2), a potent inducer of platelet aggregation. Application of aspirin, a TXA2 inhibitor, significantly reduced lung metastases. Mertk, a member of the TAM (Tyro, Axl, Mertk) family of RTKs, was also overexpressed in Met cells, which led to increased MAPK activation, epithelial–mesenchymal transition (EMT), and enrichment of cancer stem cells. Braf-mutant Met cells developed resistance to BRAFV600E inhibitor PLX4720, but remained sensitive to β-catenin inhibitor PKF118-310.ConclusionWe have identified several overexpressed genes/pathways in thyroid cancer metastasis, making them attractive therapeutic targets. Given the complexity of metastasis involving multiple pathways (PD-L1, Mertk, IL6, COX-1/Tbxas1-TXA2), simultaneously targeting more than one of these pathways may be warranted to achieve better therapeutic effect for metastatic thyroid cancer.
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spelling doaj-art-73526e1f349c4953a1d6936ef3506aa92025-02-10T05:16:24ZengFrontiers Media S.A.Frontiers in Endocrinology1664-23922025-02-011610.3389/fendo.2025.15142641514264Genome-wide transcriptome analysis and drug target discovery reveal key genes and pathways in thyroid cancer metastasisMinjing Zou0Amal Qattan1Monther Al-Alwan2Hazem Ghebeh3Naif Binjumah4Latifa Al-Haj5Khalid S. A. Khabar6Abdulmohsen Altaweel7Falah Almohanna8Abdullah M. Assiri9Abdelilah Aboussekhra10Ali S. Alzahrani11Ali S. Alzahrani12Yufei Shi13Department of Molecular Oncology, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaDepartment of Molecular Oncology, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaDepartment of Cell Therapy and Immunobiology, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaDepartment of Cell Therapy and Immunobiology, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaDepartment of Molecular Oncology, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaDepartment of Molecular Biomedicine, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaDepartment of Molecular Biomedicine, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaDepartment of Molecular Oncology, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaDepartment of Comparative Medicine, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaDepartment of Comparative Medicine, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaDepartment of Molecular Oncology, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaDepartment of Molecular Oncology, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaDepartment of Medicine, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaDepartment of Molecular Oncology, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi ArabiaIntroductionMetastasis is the major cause of thyroid cancer morbidity and mortality. However, the mechanisms are still poorly understood. MethodsWe performed genome-wide transcriptome analysis comparing gene expression profile of metastatic thyroid cancer cells (Met) with primary tumor cells established from transgenic mouse models of papillary thyroid cancer (PTC), follicular thyroid cancer (FTC), poorly differentiated thyroid cancer (PDTC), and anaplastic thyroid cancer (ATC).ResultsGenes involved in tumor microenvironment (TME), inflammation, and immune escape were significantly overexpressed in Met cells. Notably, IL-6-mediated inflammatory and PD-L1 pathways were highly active in Met cells with increased secretion of pro-inflammatory and pro-metastatic cytokines such as CCL2, CCL11, IL5, IL6, and CXCL5. Furthermore, Met cells showed robust overexpression of Tbxas1, a thromboxane A synthase 1 gene that catalyzes the conversion of prostaglandin H2 to thromboxane A2 (TXA2), a potent inducer of platelet aggregation. Application of aspirin, a TXA2 inhibitor, significantly reduced lung metastases. Mertk, a member of the TAM (Tyro, Axl, Mertk) family of RTKs, was also overexpressed in Met cells, which led to increased MAPK activation, epithelial–mesenchymal transition (EMT), and enrichment of cancer stem cells. Braf-mutant Met cells developed resistance to BRAFV600E inhibitor PLX4720, but remained sensitive to β-catenin inhibitor PKF118-310.ConclusionWe have identified several overexpressed genes/pathways in thyroid cancer metastasis, making them attractive therapeutic targets. Given the complexity of metastasis involving multiple pathways (PD-L1, Mertk, IL6, COX-1/Tbxas1-TXA2), simultaneously targeting more than one of these pathways may be warranted to achieve better therapeutic effect for metastatic thyroid cancer.https://www.frontiersin.org/articles/10.3389/fendo.2025.1514264/fullCD274 (PD-L1)TBXAS1MERTKIL6thyroid cancer metastasis
spellingShingle Minjing Zou
Amal Qattan
Monther Al-Alwan
Hazem Ghebeh
Naif Binjumah
Latifa Al-Haj
Khalid S. A. Khabar
Abdulmohsen Altaweel
Falah Almohanna
Abdullah M. Assiri
Abdelilah Aboussekhra
Ali S. Alzahrani
Ali S. Alzahrani
Yufei Shi
Genome-wide transcriptome analysis and drug target discovery reveal key genes and pathways in thyroid cancer metastasis
Frontiers in Endocrinology
CD274 (PD-L1)
TBXAS1
MERTK
IL6
thyroid cancer metastasis
title Genome-wide transcriptome analysis and drug target discovery reveal key genes and pathways in thyroid cancer metastasis
title_full Genome-wide transcriptome analysis and drug target discovery reveal key genes and pathways in thyroid cancer metastasis
title_fullStr Genome-wide transcriptome analysis and drug target discovery reveal key genes and pathways in thyroid cancer metastasis
title_full_unstemmed Genome-wide transcriptome analysis and drug target discovery reveal key genes and pathways in thyroid cancer metastasis
title_short Genome-wide transcriptome analysis and drug target discovery reveal key genes and pathways in thyroid cancer metastasis
title_sort genome wide transcriptome analysis and drug target discovery reveal key genes and pathways in thyroid cancer metastasis
topic CD274 (PD-L1)
TBXAS1
MERTK
IL6
thyroid cancer metastasis
url https://www.frontiersin.org/articles/10.3389/fendo.2025.1514264/full
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