P302: Bioinformatics pipeline for comprehensive microbial profiling from tissue biopsies using RNA-Seq

P302: Bioinformatics pipeline for comprehensive microbial profiling from tissue biopsies using RNA-Seq

Saved in:

Bibliographic Details
Main Authors:	Fahimeh Palizban, Leila Youssefian, Amir Hossein Saeidian, Fatemeh Vahidnezhad, Hassan Vahidnezhad
Format:	Article
Language:	English
Published:	Elsevier 2025-01-01
Series:	Genetics in Medicine Open
Online Access:	http://www.sciencedirect.com/science/article/pii/S2949774425003061
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

P126: Bioinformatics pipeline for somatic variant and mutation signature analysis from tissue biopsies using RNA-Seq
by: Fahimeh Palizban, et al.
Published: (2025-01-01)

Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing.
by: Andrei Prodan, et al.
Published: (2020-01-01)

Successful and Sustained Treatment of Cutaneous Tumoral Lesions in Brooke–Spiegler Syndrome (BSS) Using Ablative CO2 Laser: A Case Series and Literature Review
by: Nikoo Mozafari, et al.
Published: (2025-05-01)

Exploring the utility of snRNA-seq in profiling human bladder tissue: A comprehensive comparison with scRNA-seq
by: Briana Santo, et al.
Published: (2025-01-01)

Comprehensive analysis of scRNA-seq and bulk RNA-seq data via machine learning and bioinformatics reveals the role of lysine metabolism-related genes in gastric carcinogenesis
by: Yongfu Shao, et al.
Published: (2025-04-01)

The Role of Autophagy and Cell Communication in COPD Progression: Insights from Bioinformatics and scRNA-seq
by: Kaiqi Ren, et al.
Published: (2025-05-01)

snCED-seq: high-fidelity cryogenic enzymatic dissociation of nuclei for single-nucleus RNA-seq of FFPE tissues
by: Yunxia Guo, et al.
Published: (2025-05-01)

MORE-RNAseq: a pipeline for quantifying retrotransposition-capable LINE1 expression based on RNA-seq data
by: Yutaka Nakachi, et al.
Published: (2025-05-01)

CAM: A quality control pipeline for MNase-seq data.
by: Sheng'en Hu, et al.
Published: (2017-01-01)

Comparative Analysis of Glycogene Expression in Different Mouse Tissues Using RNA-Seq Data
by: Ahmad Firoz, et al.
Published: (2014-01-01)

Integrating gonadal RNA-seq and small RNA-seq to analyze mRNA and miRNA changes in medaka sex differentiation
by: Xing Lin, et al.
Published: (2025-05-01)

Construction of RNA m6A profiles in liver tissue of mice in sepsis-induced liver injury based on m6A MeRIP-seq and RNA-seq
by: Li Li, et al.
Published: (2025-08-01)

Annotated Bioinformatic Pipelines for Phylogenomic Placement of Mitochondrial Genomes
by: Jessica Winn, et al.
Published: (2025-03-01)

Analysis of immunogenic cell death in periodontitis based on scRNA-seq and bulk RNA-seq data
by: Erli Wu, et al.
Published: (2024-11-01)

Identification of the key role of IL-17RB in the treatment of osteoarthritis with Shaoyao Gancao decoction: Verification based on RNA-seq and bioinformatics analysis.
by: Chengzhi Hou, et al.
Published: (2025-01-01)

Worm Perturb-Seq: massively parallel whole-animal RNAi and RNA-seq
by: Hefei Zhang, et al.
Published: (2025-05-01)

miR-302d Competitively Binding with the lncRNA-341 Targets TLE4 in the Process of SSC Generation
by: Yani Zhang, et al.
Published: (2021-01-01)

Integration of bulk RNA-seq and scRNA-seq reveals transcriptomic signatures associated with deep vein thrombosis
by: Bao-ze Pan, et al.
Published: (2025-04-01)

A high-throughput pipeline for DNA/RNA/small RNA purification from tissue samples for sequencing
by: Jing Xu, et al.
Published: (2023-08-01)

Annotated Bioinformatic Pipelines for Genome Assembly and Annotation of Mitochondrial Genomes
by: Jessica Winn, et al.
Published: (2025-03-01)

Bioinformatic RNA-Seq Functional Profiling of the Tumor Suppressor Gene OPCML in Ovarian Cancers: The Multifunctional, Pleiotropic Impacts of Having Three Ig Domains
by: Adam G. Marsh, et al.
Published: (2025-05-01)

Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues
by: Rebollo, Rita, et al.
Published: (2024-09-01)

DeepDeconUQ estimates malignant cell fraction prediction intervals in bulk RNA-seq tissue.
by: Jiawei Huang, et al.
Published: (2025-06-01)

Optimized methods for scRNA-seq and snRNA-seq of skeletal muscle stored in nucleic acid stabilizing preservative
by: Elisabeth F. Heuston, et al.
Published: (2025-01-01)

Ribo-seq and RNA-seq analyses enrich the regulatory network of tomato fruit cracking
by: Zhaojiang Zhong, et al.
Published: (2024-12-01)

Expression of miR-302a, miR-302b, miR-302c, miR-302d, miR-367, miR-371, miR-372, miR-373, miR-10b, miR-21 and miR-93 in cells of different histotypes of testicular germ cell tumors
by: M. S. Knyazeva, et al.
Published: (2022-03-01)

Integration of GWAS, QTLs and keratinocyte functional assays reveals molecular mechanisms of atopic dermatitis
by: Meritxell Oliva, et al.
Published: (2025-04-01)

Fast Processing RNA-Seq on Multicore Processor
by: Lee Jia Bin, et al.
Published: (2021-12-01)

Integrating bulk RNA-seq and scRNA-seq analyses with machine learning to predict platinum response and prognosis in ovarian cancer
by: Tingting Gao, et al.
Published: (2025-05-01)

Investigation of cell development and tissue structure network based on natural Language processing of scRNA-seq data
by: Suwen Wei, et al.
Published: (2025-03-01)

Post-mortem tissue biopsies obtained at minimally invasive autopsy: an RNA-quality analysis.
by: Anita van der Linden, et al.
Published: (2014-01-01)

Plumbagin Triggers Cuproptosis in Hepatocellular Carcinoma (HCC) via the DNA‐Methyltransferase 1 (DNMT1)/microRNA‐302a‐3p (miR‐302a‐3p)/ATPase Copper Transporting Beta (ATP7B) Axis
by: Chuyu Wang, et al.
Published: (2025-08-01)

An mRNA expression atlas for the duck with public RNA-seq datasets
by: Qiuyu Tao, et al.
Published: (2025-03-01)

Identification of serum microRNA biomarkers for tuberculosis using RNA-seq.
by: Hongtai Zhang, et al.
Published: (2014-01-01)

Combined single-cell RNA-seq and bulk RNA-seq construction of M2 TAMs signature for predicting HNSCC prognosis and immunotherapy
by: Jiale Wang, et al.
Published: (2025-08-01)

Integrating single-cell RNA-Seq and bulk RNA-Seq data to explore the key role of fatty acid metabolism in hepatocellular carcinoma
by: Hua Dai, et al.
Published: (2025-01-01)

Comprehensive analysis of scRNA-seq and bulk RNA-seq reveals the non-cardiomyocytes heterogeneity and novel cell populations in dilated cardiomyopathy
by: Siyu He, et al.
Published: (2025-01-01)

Genetic analysis and identification of the candidate genes of maize resistance to Ustilago maydis by BSA-Seq and RNA-Seq
by: Jingyi Wang, et al.
Published: (2025-07-01)

Systematic evaluation of the isolated effect of tissue environment on the transcriptome using a single-cell RNA-seq atlas dataset
by: Daigo Okada, et al.
Published: (2025-04-01)

snRNA-seq of adipose tissues reveals the potential cellular and molecular mechanisms of cold and disease resistance in Mongolian cattle
by: Zhiduan Chi, et al.
Published: (2024-10-01)