SARS-CoV-2 virus lacking the envelope and membrane open-reading frames as a vaccine platform

Abstract To address the need for broadly protective SARS-CoV-2 vaccines, we developed an attenuated a SARS-CoV-2 vaccine virus that lacks the open reading frames of two viral structural proteins: the envelope (E) and membrane (M) proteins. This vaccine virus (ΔEM) replicates in a cell line stably ex...

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Main Authors: Makoto Kuroda, Peter J. Halfmann, Ryuta Uraki, Seiya Yamayoshi, Taksoo Kim, Tammy A. Armbrust, Sam Spyra, Randall Dahn, Lavanya Babujee, Yoshihiro Kawaoka
Format: Article
Language:English
Published: Nature Portfolio 2025-05-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-025-59533-4
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author Makoto Kuroda
Peter J. Halfmann
Ryuta Uraki
Seiya Yamayoshi
Taksoo Kim
Tammy A. Armbrust
Sam Spyra
Randall Dahn
Lavanya Babujee
Yoshihiro Kawaoka
author_facet Makoto Kuroda
Peter J. Halfmann
Ryuta Uraki
Seiya Yamayoshi
Taksoo Kim
Tammy A. Armbrust
Sam Spyra
Randall Dahn
Lavanya Babujee
Yoshihiro Kawaoka
author_sort Makoto Kuroda
collection DOAJ
description Abstract To address the need for broadly protective SARS-CoV-2 vaccines, we developed an attenuated a SARS-CoV-2 vaccine virus that lacks the open reading frames of two viral structural proteins: the envelope (E) and membrane (M) proteins. This vaccine virus (ΔEM) replicates in a cell line stably expressing E and M but not in wild-type cells. Vaccination with ΔEM elicits a CD8 T-cell response against the viral spike and nucleocapsid proteins. Two vaccinations with ΔEM provide better protection of the lower respiratory tissues than a single dose against the Delta and Omicron XBB variants in hamsters. Moreover, ΔEM is effective as a booster in hamsters previously vaccinated with an mRNA-based vaccine, providing higher levels of protection in both respiratory tissues compared to the mRNA vaccine booster. Collectively, our data demonstrate the feasibility of a SARS-CoV-2 ΔEM vaccine candidate virus as a vaccine platform.
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spelling doaj-art-718a470de9174d0b9afc4e90ed760dd32025-08-20T01:51:30ZengNature PortfolioNature Communications2041-17232025-05-0116111410.1038/s41467-025-59533-4SARS-CoV-2 virus lacking the envelope and membrane open-reading frames as a vaccine platformMakoto Kuroda0Peter J. Halfmann1Ryuta Uraki2Seiya Yamayoshi3Taksoo Kim4Tammy A. Armbrust5Sam Spyra6Randall Dahn7Lavanya Babujee8Yoshihiro Kawaoka9Influenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of WisconsinInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of WisconsinDivision of Virology, Department of Microbiology and Immunology, Institute of Medical Science, University of TokyoDivision of Virology, Department of Microbiology and Immunology, Institute of Medical Science, University of TokyoInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of WisconsinInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of WisconsinInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of WisconsinInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of WisconsinInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of WisconsinInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of WisconsinAbstract To address the need for broadly protective SARS-CoV-2 vaccines, we developed an attenuated a SARS-CoV-2 vaccine virus that lacks the open reading frames of two viral structural proteins: the envelope (E) and membrane (M) proteins. This vaccine virus (ΔEM) replicates in a cell line stably expressing E and M but not in wild-type cells. Vaccination with ΔEM elicits a CD8 T-cell response against the viral spike and nucleocapsid proteins. Two vaccinations with ΔEM provide better protection of the lower respiratory tissues than a single dose against the Delta and Omicron XBB variants in hamsters. Moreover, ΔEM is effective as a booster in hamsters previously vaccinated with an mRNA-based vaccine, providing higher levels of protection in both respiratory tissues compared to the mRNA vaccine booster. Collectively, our data demonstrate the feasibility of a SARS-CoV-2 ΔEM vaccine candidate virus as a vaccine platform.https://doi.org/10.1038/s41467-025-59533-4
spellingShingle Makoto Kuroda
Peter J. Halfmann
Ryuta Uraki
Seiya Yamayoshi
Taksoo Kim
Tammy A. Armbrust
Sam Spyra
Randall Dahn
Lavanya Babujee
Yoshihiro Kawaoka
SARS-CoV-2 virus lacking the envelope and membrane open-reading frames as a vaccine platform
Nature Communications
title SARS-CoV-2 virus lacking the envelope and membrane open-reading frames as a vaccine platform
title_full SARS-CoV-2 virus lacking the envelope and membrane open-reading frames as a vaccine platform
title_fullStr SARS-CoV-2 virus lacking the envelope and membrane open-reading frames as a vaccine platform
title_full_unstemmed SARS-CoV-2 virus lacking the envelope and membrane open-reading frames as a vaccine platform
title_short SARS-CoV-2 virus lacking the envelope and membrane open-reading frames as a vaccine platform
title_sort sars cov 2 virus lacking the envelope and membrane open reading frames as a vaccine platform
url https://doi.org/10.1038/s41467-025-59533-4
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