Dataset for the near-complete hybrid genome assembly of Citrobacter werkmanii UPMLSS01 isolated from Borneo river and insights into its native antibiotic resistance repertoireNCBI
The near-complete genome sequence of a Citrobacter werkmanii UPMLSS01, isolated from the Kemena River in Bintulu, Sarawak, Malaysia, is presented. Remarkably, this bacterium exhibited resistance to beta-lactam despite no prior exposure, suggesting an innate resistance mechanism in an environment inc...
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Elsevier
2025-08-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340925005992 |
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| author | Sui Sien Leong Han Ming Gan |
| author_facet | Sui Sien Leong Han Ming Gan |
| author_sort | Sui Sien Leong |
| collection | DOAJ |
| description | The near-complete genome sequence of a Citrobacter werkmanii UPMLSS01, isolated from the Kemena River in Bintulu, Sarawak, Malaysia, is presented. Remarkably, this bacterium exhibited resistance to beta-lactam despite no prior exposure, suggesting an innate resistance mechanism in an environment increasingly impacted by anthropogenic pressures. Genome sequencing was performed using both Illumina (2 × 150 bp paired-end) and Oxford Nanopore technologies, yielding a high-quality de novo assembly with a total length of 4994,936 base pairs, a GC content of 52 %, and an N50 of 3.5 Mb. The assembly comprises three contigs, none of which were identified as plasmid or mobile elements. Genomic analysis revealed that the strain belongs to sequence type 948, while also harboring the blaCMY gene presumably responsible for the beta-lactam resistance. Notably, this is the first genome of Citrobacter werkmanii reported from Borneo, Malaysia, underscoring a significant milestone that provides a robust baseline for future phylogenomic studies and molecular resistance profiling in both environmental and clinical settings. |
| format | Article |
| id | doaj-art-6a54283f7c1d41ee9f1a88429b8bd8a7 |
| institution | DOAJ |
| issn | 2352-3409 |
| language | English |
| publishDate | 2025-08-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj-art-6a54283f7c1d41ee9f1a88429b8bd8a72025-08-20T02:59:57ZengElsevierData in Brief2352-34092025-08-016111187510.1016/j.dib.2025.111875Dataset for the near-complete hybrid genome assembly of Citrobacter werkmanii UPMLSS01 isolated from Borneo river and insights into its native antibiotic resistance repertoireNCBISui Sien Leong0Han Ming Gan1Department of Animal Sciences and Fishery, Faculty of Agricultural and Forestry Sciences, Universiti Putra Malaysia Campus Bintulu Sarawak, Bintulu 97008, Sarawak, Malaysia; International Institute of Aquaculture and Aquatic Sciences (I-AQUAS), Universiti Putra Malaysia, 0150 Port Dickson, Negeri Sembilan, Malaysia; Corresponding author.Patriot Biotech Sdn Bhd, Bandar Sunway, 47500, MalaysiaThe near-complete genome sequence of a Citrobacter werkmanii UPMLSS01, isolated from the Kemena River in Bintulu, Sarawak, Malaysia, is presented. Remarkably, this bacterium exhibited resistance to beta-lactam despite no prior exposure, suggesting an innate resistance mechanism in an environment increasingly impacted by anthropogenic pressures. Genome sequencing was performed using both Illumina (2 × 150 bp paired-end) and Oxford Nanopore technologies, yielding a high-quality de novo assembly with a total length of 4994,936 base pairs, a GC content of 52 %, and an N50 of 3.5 Mb. The assembly comprises three contigs, none of which were identified as plasmid or mobile elements. Genomic analysis revealed that the strain belongs to sequence type 948, while also harboring the blaCMY gene presumably responsible for the beta-lactam resistance. Notably, this is the first genome of Citrobacter werkmanii reported from Borneo, Malaysia, underscoring a significant milestone that provides a robust baseline for future phylogenomic studies and molecular resistance profiling in both environmental and clinical settings.http://www.sciencedirect.com/science/article/pii/S2352340925005992CitrobacterNanoporeIlluminaBeta-lactamase |
| spellingShingle | Sui Sien Leong Han Ming Gan Dataset for the near-complete hybrid genome assembly of Citrobacter werkmanii UPMLSS01 isolated from Borneo river and insights into its native antibiotic resistance repertoireNCBI Data in Brief Citrobacter Nanopore Illumina Beta-lactamase |
| title | Dataset for the near-complete hybrid genome assembly of Citrobacter werkmanii UPMLSS01 isolated from Borneo river and insights into its native antibiotic resistance repertoireNCBI |
| title_full | Dataset for the near-complete hybrid genome assembly of Citrobacter werkmanii UPMLSS01 isolated from Borneo river and insights into its native antibiotic resistance repertoireNCBI |
| title_fullStr | Dataset for the near-complete hybrid genome assembly of Citrobacter werkmanii UPMLSS01 isolated from Borneo river and insights into its native antibiotic resistance repertoireNCBI |
| title_full_unstemmed | Dataset for the near-complete hybrid genome assembly of Citrobacter werkmanii UPMLSS01 isolated from Borneo river and insights into its native antibiotic resistance repertoireNCBI |
| title_short | Dataset for the near-complete hybrid genome assembly of Citrobacter werkmanii UPMLSS01 isolated from Borneo river and insights into its native antibiotic resistance repertoireNCBI |
| title_sort | dataset for the near complete hybrid genome assembly of citrobacter werkmanii upmlss01 isolated from borneo river and insights into its native antibiotic resistance repertoirencbi |
| topic | Citrobacter Nanopore Illumina Beta-lactamase |
| url | http://www.sciencedirect.com/science/article/pii/S2352340925005992 |
| work_keys_str_mv | AT suisienleong datasetforthenearcompletehybridgenomeassemblyofcitrobacterwerkmaniiupmlss01isolatedfromborneoriverandinsightsintoitsnativeantibioticresistancerepertoirencbi AT hanminggan datasetforthenearcompletehybridgenomeassemblyofcitrobacterwerkmaniiupmlss01isolatedfromborneoriverandinsightsintoitsnativeantibioticresistancerepertoirencbi |