Changes in microbiome composition during ontogeny and dispersal of the coral boring sponge Thoosa mismalolli

Abstract Dispersal is an important life history trait that plays a key role in the demography and evolution of species. We employed a combined approach of DNA sequencing and transmission electron microscopy to examine the changes in the microbiome during the ontogeny and dispersal of the coral-excav...

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Main Authors: Eric Bautista-Guerrero, José Luis Carballo, Fabián Alejandro Rodríguez Zaragoza, Bruno Goméz-Gil, Alejandra García-Gasca, Alma P. Rodríguez-Troncoso, Adrián González-Castillo
Format: Article
Language:English
Published: Nature Portfolio 2025-01-01
Series:Scientific Reports
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Online Access:https://doi.org/10.1038/s41598-025-85622-x
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author Eric Bautista-Guerrero
José Luis Carballo
Fabián Alejandro Rodríguez Zaragoza
Bruno Goméz-Gil
Alejandra García-Gasca
Alma P. Rodríguez-Troncoso
Adrián González-Castillo
author_facet Eric Bautista-Guerrero
José Luis Carballo
Fabián Alejandro Rodríguez Zaragoza
Bruno Goméz-Gil
Alejandra García-Gasca
Alma P. Rodríguez-Troncoso
Adrián González-Castillo
author_sort Eric Bautista-Guerrero
collection DOAJ
description Abstract Dispersal is an important life history trait that plays a key role in the demography and evolution of species. We employed a combined approach of DNA sequencing and transmission electron microscopy to examine the changes in the microbiome during the ontogeny and dispersal of the coral-excavating sponge Thoosa mismalolli. The results show that sponge can acquired their associated bacteria via both vertical (VT) and horizontal transmission (HT). Adult sponges, brooding larvae, and early free-swimming sponge larvae harbor a similar high-diversity microbial assemblage, dominated by Proteobacteria and Chloroflexi, which change throughout the larval dispersal phase. Larvae collected offshore showed a reorganization of their microbiome with a significant reduction of the dominance of inherited bacteria (Proteobacteria and Chloroflexi), and an enrichment of environmentally derived bacteria taxa (Bacteroidetes, Tenericutes, and Firmicutes). TEM confirmed a substantial change in cell structure and microbial composition, attributed to symbionts’ massive phagocytosis. This research provides information on microbiome dynamics through the sponge ontogeny and sheds on their possible role in the dispersal capacity of their larvae.
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spelling doaj-art-6748a7daeb0949adbab9c73cf1f4eea02025-01-19T12:17:26ZengNature PortfolioScientific Reports2045-23222025-01-0115111810.1038/s41598-025-85622-xChanges in microbiome composition during ontogeny and dispersal of the coral boring sponge Thoosa mismalolliEric Bautista-Guerrero0José Luis Carballo1Fabián Alejandro Rodríguez Zaragoza2Bruno Goméz-Gil3Alejandra García-Gasca4Alma P. Rodríguez-Troncoso5Adrián González-Castillo6Laboratorio de Ecología Marina, Centro de Investigaciones Costeras, Centro Universitario de la Costa, Universidad de GuadalajaraLaboratorio de Biología Marina, Departamento de Zoología, Facultad de Biología, Universidad de SevillaLaboratorio de Ecología Molecular, Microbiología y Taxonomía (LEMITAX), Departamento de Ecología Aplicada, Centro Universitario de Ciencias Biológicas y Agropecuarias, Universidad de GuadalajaraCentro de Investigación en Alimentación y Desarrollo, Mazatlán Unit for Aquaculture and Environmental ManagementLaboratorio de Biología Molecular, Centro de Investigación en Alimentación y Desarrollo, A.C.Laboratorio de Ecología Marina, Centro de Investigaciones Costeras, Centro Universitario de la Costa, Universidad de GuadalajaraLaboratorio de Bioinformática Microbiana, Programa Académico de Ingeniería en Biotecnología, Universidad Politécnica de SinaloaAbstract Dispersal is an important life history trait that plays a key role in the demography and evolution of species. We employed a combined approach of DNA sequencing and transmission electron microscopy to examine the changes in the microbiome during the ontogeny and dispersal of the coral-excavating sponge Thoosa mismalolli. The results show that sponge can acquired their associated bacteria via both vertical (VT) and horizontal transmission (HT). Adult sponges, brooding larvae, and early free-swimming sponge larvae harbor a similar high-diversity microbial assemblage, dominated by Proteobacteria and Chloroflexi, which change throughout the larval dispersal phase. Larvae collected offshore showed a reorganization of their microbiome with a significant reduction of the dominance of inherited bacteria (Proteobacteria and Chloroflexi), and an enrichment of environmentally derived bacteria taxa (Bacteroidetes, Tenericutes, and Firmicutes). TEM confirmed a substantial change in cell structure and microbial composition, attributed to symbionts’ massive phagocytosis. This research provides information on microbiome dynamics through the sponge ontogeny and sheds on their possible role in the dispersal capacity of their larvae.https://doi.org/10.1038/s41598-025-85622-xDispersalLarvaMicrobiomeVertical transmissionPhagocytosis
spellingShingle Eric Bautista-Guerrero
José Luis Carballo
Fabián Alejandro Rodríguez Zaragoza
Bruno Goméz-Gil
Alejandra García-Gasca
Alma P. Rodríguez-Troncoso
Adrián González-Castillo
Changes in microbiome composition during ontogeny and dispersal of the coral boring sponge Thoosa mismalolli
Scientific Reports
Dispersal
Larva
Microbiome
Vertical transmission
Phagocytosis
title Changes in microbiome composition during ontogeny and dispersal of the coral boring sponge Thoosa mismalolli
title_full Changes in microbiome composition during ontogeny and dispersal of the coral boring sponge Thoosa mismalolli
title_fullStr Changes in microbiome composition during ontogeny and dispersal of the coral boring sponge Thoosa mismalolli
title_full_unstemmed Changes in microbiome composition during ontogeny and dispersal of the coral boring sponge Thoosa mismalolli
title_short Changes in microbiome composition during ontogeny and dispersal of the coral boring sponge Thoosa mismalolli
title_sort changes in microbiome composition during ontogeny and dispersal of the coral boring sponge thoosa mismalolli
topic Dispersal
Larva
Microbiome
Vertical transmission
Phagocytosis
url https://doi.org/10.1038/s41598-025-85622-x
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