Tissue of origin characterization of cell free DNA in seminal plasma: Implications for new liquid biopsies.
Liquid biopsies are becoming increasingly used for the detection and monitoring of disease states. While cell free DNA (cfDNA) in blood and urine have been well studied, much less is known about the composition of cfDNA in seminal fluid. We sought to characterize cfDNA in seminal fluid through tissu...
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| Format: | Article |
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Public Library of Science (PLoS)
2025-01-01
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| Series: | PLoS ONE |
| Online Access: | https://doi.org/10.1371/journal.pone.0317712 |
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| author | Stephanie Huang James C Hart James F Smith Shellie Bench Laura Rivas Yepes Bailey Griscom Kim M Clark-Langone |
| author_facet | Stephanie Huang James C Hart James F Smith Shellie Bench Laura Rivas Yepes Bailey Griscom Kim M Clark-Langone |
| author_sort | Stephanie Huang |
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| description | Liquid biopsies are becoming increasingly used for the detection and monitoring of disease states. While cell free DNA (cfDNA) in blood and urine have been well studied, much less is known about the composition of cfDNA in seminal fluid. We sought to characterize cfDNA in seminal fluid through tissue of origin studies using methylation analysis in men aged 21-60 yrs. We confirmed the observations of others that seminal fluid contains an abundance of cfDNA that is both nucleosomal and > 1 kb. However, here we demonstrate for the first time that the high molecular weight (HMW) DNA harbors a lower sperm signal and higher somatic cell signal compared to the nucleosomal fraction. Prostate, granulocytes and kidney showed a mean predicted increased contribution of 6.2%, 4.9% and 2.9%, respectively in the HMW fraction. While sperm was the predominant signal in most men without vasectomies, granulocyte cfDNA made up most of the signal in two of the non-vasectomy subjects. Unexpectedly, the proportion of prostate signal reached as high as 26.5% in the HMW fraction in non-vasectomy subjects. We also observed subject-specific cfDNA size distribution patterns that were reproducible over time, irrespective of abstinence times. These results suggest that seminal fluid is a rich source of cfDNA from various somatic cell types, and enriching for the HMW fraction would yield even higher sensitivity for somatic cfDNA detection. Considering these novel findings, it appears that seminal fluid may be able to serve as liquid biopsy for the detection and monitoring of prostate cancer, benign prostate hyperplasia, prostatitis and infertility. |
| format | Article |
| id | doaj-art-605ba88515364a80a8265b3dd386b721 |
| institution | OA Journals |
| issn | 1932-6203 |
| language | English |
| publishDate | 2025-01-01 |
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| spelling | doaj-art-605ba88515364a80a8265b3dd386b7212025-08-20T02:25:59ZengPublic Library of Science (PLoS)PLoS ONE1932-62032025-01-01203e031771210.1371/journal.pone.0317712Tissue of origin characterization of cell free DNA in seminal plasma: Implications for new liquid biopsies.Stephanie HuangJames C HartJames F SmithShellie BenchLaura Rivas YepesBailey GriscomKim M Clark-LangoneLiquid biopsies are becoming increasingly used for the detection and monitoring of disease states. While cell free DNA (cfDNA) in blood and urine have been well studied, much less is known about the composition of cfDNA in seminal fluid. We sought to characterize cfDNA in seminal fluid through tissue of origin studies using methylation analysis in men aged 21-60 yrs. We confirmed the observations of others that seminal fluid contains an abundance of cfDNA that is both nucleosomal and > 1 kb. However, here we demonstrate for the first time that the high molecular weight (HMW) DNA harbors a lower sperm signal and higher somatic cell signal compared to the nucleosomal fraction. Prostate, granulocytes and kidney showed a mean predicted increased contribution of 6.2%, 4.9% and 2.9%, respectively in the HMW fraction. While sperm was the predominant signal in most men without vasectomies, granulocyte cfDNA made up most of the signal in two of the non-vasectomy subjects. Unexpectedly, the proportion of prostate signal reached as high as 26.5% in the HMW fraction in non-vasectomy subjects. We also observed subject-specific cfDNA size distribution patterns that were reproducible over time, irrespective of abstinence times. These results suggest that seminal fluid is a rich source of cfDNA from various somatic cell types, and enriching for the HMW fraction would yield even higher sensitivity for somatic cfDNA detection. Considering these novel findings, it appears that seminal fluid may be able to serve as liquid biopsy for the detection and monitoring of prostate cancer, benign prostate hyperplasia, prostatitis and infertility.https://doi.org/10.1371/journal.pone.0317712 |
| spellingShingle | Stephanie Huang James C Hart James F Smith Shellie Bench Laura Rivas Yepes Bailey Griscom Kim M Clark-Langone Tissue of origin characterization of cell free DNA in seminal plasma: Implications for new liquid biopsies. PLoS ONE |
| title | Tissue of origin characterization of cell free DNA in seminal plasma: Implications for new liquid biopsies. |
| title_full | Tissue of origin characterization of cell free DNA in seminal plasma: Implications for new liquid biopsies. |
| title_fullStr | Tissue of origin characterization of cell free DNA in seminal plasma: Implications for new liquid biopsies. |
| title_full_unstemmed | Tissue of origin characterization of cell free DNA in seminal plasma: Implications for new liquid biopsies. |
| title_short | Tissue of origin characterization of cell free DNA in seminal plasma: Implications for new liquid biopsies. |
| title_sort | tissue of origin characterization of cell free dna in seminal plasma implications for new liquid biopsies |
| url | https://doi.org/10.1371/journal.pone.0317712 |
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