A chromosomal-scale reference genome for Rosa hugonis
Abstract Rosa hugonis is widely distributed in the Hengduan Mountains, Qinling Mountains, and northern China. It is an important candidate species for ecological restoration, given its good adaptability. Here, we present the first high-quality chromosome-level assembly of R. hugonis based on HiFi re...
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| Format: | Article |
| Language: | English |
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Nature Portfolio
2025-02-01
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| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-025-04526-7 |
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| author | Zhenlong Liang Jia Miao Hengning Deng Ruifang Jiao Liangying Li Shiqi Li Zhongyu Tang Jian Ru Xinfen Gao |
| author_facet | Zhenlong Liang Jia Miao Hengning Deng Ruifang Jiao Liangying Li Shiqi Li Zhongyu Tang Jian Ru Xinfen Gao |
| author_sort | Zhenlong Liang |
| collection | DOAJ |
| description | Abstract Rosa hugonis is widely distributed in the Hengduan Mountains, Qinling Mountains, and northern China. It is an important candidate species for ecological restoration, given its good adaptability. Here, we present the first high-quality chromosome-level assembly of R. hugonis based on HiFi reads and Hi-C data. The sequencing data were then assembled onto seven pseudochromosomes of R. hugonis. The genome sizes of R. hugonis is 337.92 Mb, with contig N50 length of 26.84 Mb. We annotated 36,218 protein-coding genes in R. hugonis. In summary, the high-quality genome sequences of R. hugonis provide a genetic roadmap for the study of its genetics and species relationships. This will facilitate future genomic comparative studies across more species within Rosa. |
| format | Article |
| id | doaj-art-602c5e2eace34e4ebc8341f2223db9cd |
| institution | DOAJ |
| issn | 2052-4463 |
| language | English |
| publishDate | 2025-02-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj-art-602c5e2eace34e4ebc8341f2223db9cd2025-08-20T02:48:16ZengNature PortfolioScientific Data2052-44632025-02-011211810.1038/s41597-025-04526-7A chromosomal-scale reference genome for Rosa hugonisZhenlong Liang0Jia Miao1Hengning Deng2Ruifang Jiao3Liangying Li4Shiqi Li5Zhongyu Tang6Jian Ru7Xinfen Gao8Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416Guangdong Provincial Key Laboratory of Applied Botany, Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, Xingke Road 723Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), School of Life Sciences, Southwest UniversityKey Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416Key Laboratory for Regional Plants Conservation and Ecological Restoration of Northeast Jiangxi, College of Life Science, Shangrao Normal UniversityKey Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416Abstract Rosa hugonis is widely distributed in the Hengduan Mountains, Qinling Mountains, and northern China. It is an important candidate species for ecological restoration, given its good adaptability. Here, we present the first high-quality chromosome-level assembly of R. hugonis based on HiFi reads and Hi-C data. The sequencing data were then assembled onto seven pseudochromosomes of R. hugonis. The genome sizes of R. hugonis is 337.92 Mb, with contig N50 length of 26.84 Mb. We annotated 36,218 protein-coding genes in R. hugonis. In summary, the high-quality genome sequences of R. hugonis provide a genetic roadmap for the study of its genetics and species relationships. This will facilitate future genomic comparative studies across more species within Rosa.https://doi.org/10.1038/s41597-025-04526-7 |
| spellingShingle | Zhenlong Liang Jia Miao Hengning Deng Ruifang Jiao Liangying Li Shiqi Li Zhongyu Tang Jian Ru Xinfen Gao A chromosomal-scale reference genome for Rosa hugonis Scientific Data |
| title | A chromosomal-scale reference genome for Rosa hugonis |
| title_full | A chromosomal-scale reference genome for Rosa hugonis |
| title_fullStr | A chromosomal-scale reference genome for Rosa hugonis |
| title_full_unstemmed | A chromosomal-scale reference genome for Rosa hugonis |
| title_short | A chromosomal-scale reference genome for Rosa hugonis |
| title_sort | chromosomal scale reference genome for rosa hugonis |
| url | https://doi.org/10.1038/s41597-025-04526-7 |
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