Dual-key cooperatively activated DNA regulator for controlling mitochondria-lysosome interactions

Abstract Mitochondria-lysosome interactions are critical for maintaining cellular homeostasis. Although genetically encoded protein based optogenetic technique is developed to regulate such interactions, it still suffers from shortcomings including complicated operation and potential interference to...

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Main Authors: Yang Xiao, Longyi Zhu, Songyuan Du, Xinyi Ge, Lequn Ma, Shengyuan Deng, Kewei Ren
Format: Article
Language:English
Published: Nature Portfolio 2025-08-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-025-63040-x
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author Yang Xiao
Longyi Zhu
Songyuan Du
Xinyi Ge
Lequn Ma
Shengyuan Deng
Kewei Ren
author_facet Yang Xiao
Longyi Zhu
Songyuan Du
Xinyi Ge
Lequn Ma
Shengyuan Deng
Kewei Ren
author_sort Yang Xiao
collection DOAJ
description Abstract Mitochondria-lysosome interactions are critical for maintaining cellular homeostasis. Although genetically encoded protein based optogenetic technique is developed to regulate such interactions, it still suffers from shortcomings including complicated operation and potential interference to organelle functions. Here, we present a fast, simple, biocompatible and programmable platform via activable DNA regulators to achieve spatiotemporal regulation of mitochondria-lysosome interactions in living cells. In our system, two locked DNA regulators, OK-MLIR and DK-MLIR, that can be respectively activated with UV light (One Key) as well as UV light and endogenous glutathione (Dual Keys), are modularly designed for modulating mitochondria-lysosome contacts. We show that these DNA regulators can be used for facilitating mitochondrial fission and autophagy. Moreover, the DK-MLIR enables selective and efficient manipulation of target cell migration and proliferation with highly temporal and spatial controllability. This programmable and modular design principle provides a platform for organelle interaction study, cellular regulation and precision therapy.
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institution Kabale University
issn 2041-1723
language English
publishDate 2025-08-01
publisher Nature Portfolio
record_format Article
series Nature Communications
spelling doaj-art-5cc2d8953d9c4f23bdb82f74acfb83082025-08-24T11:39:06ZengNature PortfolioNature Communications2041-17232025-08-0116111010.1038/s41467-025-63040-xDual-key cooperatively activated DNA regulator for controlling mitochondria-lysosome interactionsYang Xiao0Longyi Zhu1Songyuan Du2Xinyi Ge3Lequn Ma4Shengyuan Deng5Kewei Ren6School of Chemistry and Chemical Engineering, Nanjing University of Science and TechnologySchool of Chemistry and Chemical Engineering, Nanjing University of Science and TechnologySchool of Chemistry and Chemical Engineering, Nanjing University of Science and TechnologySchool of Chemistry and Chemical Engineering, Nanjing University of Science and TechnologySchool of Chemistry and Chemical Engineering, Nanjing University of Science and TechnologySchool of Environmental and Biological Engineering, Nanjing University of Science and TechnologySchool of Chemistry and Chemical Engineering, Nanjing University of Science and TechnologyAbstract Mitochondria-lysosome interactions are critical for maintaining cellular homeostasis. Although genetically encoded protein based optogenetic technique is developed to regulate such interactions, it still suffers from shortcomings including complicated operation and potential interference to organelle functions. Here, we present a fast, simple, biocompatible and programmable platform via activable DNA regulators to achieve spatiotemporal regulation of mitochondria-lysosome interactions in living cells. In our system, two locked DNA regulators, OK-MLIR and DK-MLIR, that can be respectively activated with UV light (One Key) as well as UV light and endogenous glutathione (Dual Keys), are modularly designed for modulating mitochondria-lysosome contacts. We show that these DNA regulators can be used for facilitating mitochondrial fission and autophagy. Moreover, the DK-MLIR enables selective and efficient manipulation of target cell migration and proliferation with highly temporal and spatial controllability. This programmable and modular design principle provides a platform for organelle interaction study, cellular regulation and precision therapy.https://doi.org/10.1038/s41467-025-63040-x
spellingShingle Yang Xiao
Longyi Zhu
Songyuan Du
Xinyi Ge
Lequn Ma
Shengyuan Deng
Kewei Ren
Dual-key cooperatively activated DNA regulator for controlling mitochondria-lysosome interactions
Nature Communications
title Dual-key cooperatively activated DNA regulator for controlling mitochondria-lysosome interactions
title_full Dual-key cooperatively activated DNA regulator for controlling mitochondria-lysosome interactions
title_fullStr Dual-key cooperatively activated DNA regulator for controlling mitochondria-lysosome interactions
title_full_unstemmed Dual-key cooperatively activated DNA regulator for controlling mitochondria-lysosome interactions
title_short Dual-key cooperatively activated DNA regulator for controlling mitochondria-lysosome interactions
title_sort dual key cooperatively activated dna regulator for controlling mitochondria lysosome interactions
url https://doi.org/10.1038/s41467-025-63040-x
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AT longyizhu dualkeycooperativelyactivateddnaregulatorforcontrollingmitochondrialysosomeinteractions
AT songyuandu dualkeycooperativelyactivateddnaregulatorforcontrollingmitochondrialysosomeinteractions
AT xinyige dualkeycooperativelyactivateddnaregulatorforcontrollingmitochondrialysosomeinteractions
AT lequnma dualkeycooperativelyactivateddnaregulatorforcontrollingmitochondrialysosomeinteractions
AT shengyuandeng dualkeycooperativelyactivateddnaregulatorforcontrollingmitochondrialysosomeinteractions
AT keweiren dualkeycooperativelyactivateddnaregulatorforcontrollingmitochondrialysosomeinteractions