Evidence of microbiome contribution to the escalation of pyrethroid resistance in the major malaria vectors Anopheles gambiae s.s. and Anopheles funestus s.s

Abstract Background Exacerbation of pyrethroid resistance severely jeopardises the effectiveness of malaria vector control efforts. However, the mechanisms enabling the vectors to now survive exposure to very high doses of pyrethroids remain unclear. Here, using High-throughput sequencing of the 16 ...

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Main Authors: Fleuriane Metissa Djondji Kamga, Leon M. Jean Mugenzi, Vanessa Brigitte Ngannang-Fezeu, François Sougal Ngambia Freitas, Calmes Ursain Bouaka Tsakeng, Maurice Marcel Sandeu, Magellan Tchouakui, Charles Sinclair Wondji
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Language:English
Published: BMC 2025-07-01
Series:BMC Microbiology
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Online Access:https://doi.org/10.1186/s12866-025-04114-0
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author Fleuriane Metissa Djondji Kamga
Leon M. Jean Mugenzi
Vanessa Brigitte Ngannang-Fezeu
François Sougal Ngambia Freitas
Calmes Ursain Bouaka Tsakeng
Maurice Marcel Sandeu
Magellan Tchouakui
Charles Sinclair Wondji
author_facet Fleuriane Metissa Djondji Kamga
Leon M. Jean Mugenzi
Vanessa Brigitte Ngannang-Fezeu
François Sougal Ngambia Freitas
Calmes Ursain Bouaka Tsakeng
Maurice Marcel Sandeu
Magellan Tchouakui
Charles Sinclair Wondji
author_sort Fleuriane Metissa Djondji Kamga
collection DOAJ
description Abstract Background Exacerbation of pyrethroid resistance severely jeopardises the effectiveness of malaria vector control efforts. However, the mechanisms enabling the vectors to now survive exposure to very high doses of pyrethroids remain unclear. Here, using High-throughput sequencing of the 16 S ribosomal RNA gene coupled with antibiotic treatment, we provide evidence linking the mosquito microbiome to the escalation of pyrethroid resistance in major African malaria vectors, Anopheles gambiae (s.s.) and Anopheles funestus (s.s.). Results Phenotypic characterisation of An. gambiae (s.s.) and An. funestus (s.s.) populations revealed a high level of resistance to pyrethroid in both species, with mortality rates < 91% at 10x the diagnostic dose of each insecticide. A significant difference in bacterial composition was observed in An. gambiae s.s. between resistant mosquitoes exposed to 1X and 10X the diagnostic dose of permethrin, and the susceptible strains (PERMANOVA-F: 8.06; p = 0.02). The abundance of Pseudomonas_1 (Log2FC: 4.42, p = 0.0001) and Burkholderia_1 (Log2FC: 4.95, p = 0.001) bacteria were consistently associated with mosquitoes surviving 1X and 10X the diagnostic concentrations of permethrin, respectively, while Serratia_2 bacteria was mostly associated with insecticide susceptibility. In the An. funestus s.s. strain, there was no significant difference in bacterial alpha- and beta-diversity between the FUMOZ-R (exhibiting normal deltamethrin resistance) and FUMOZ-HR (selected for high deltamethrin resistance), suggesting a minimal impact of selection pressure on bacterial composition. However, in FUMOZ-HR, there was an increase in the abundance of Rahnella (Log2FC: 15.954, p = 9.73 E-12) and Leucobacter (Log2FC: 7.6, p = 0.008) bacteria, indicating their potential role in worsening deltamethrin resistance. Furthermore, treating resistant mosquitoes (both Anopheles species) with broad-spectrum bactericidal antibiotics (penicillin/streptomycin) via sugar solution increased their susceptibility to various diagnostic doses of permethrin and deltamethrin in WHO pyrethroid intensity bioassays. Conclusion Overall, our study emphasises the potential role of the microbiome in the escalation of insecticide resistance in Anopheles mosquitoes, identifying key bacterial strains associated with insecticide resistance and susceptibility. These candidate bacteria warrant further investigation to elucidate the mechanisms by which they contribute to the escalation of pyrethroid resistance.
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spelling doaj-art-57a20f6f7a7645d59ce929dc32f7fe8f2025-08-20T03:03:38ZengBMCBMC Microbiology1471-21802025-07-0125112010.1186/s12866-025-04114-0Evidence of microbiome contribution to the escalation of pyrethroid resistance in the major malaria vectors Anopheles gambiae s.s. and Anopheles funestus s.sFleuriane Metissa Djondji Kamga0Leon M. Jean Mugenzi1Vanessa Brigitte Ngannang-Fezeu2François Sougal Ngambia Freitas3Calmes Ursain Bouaka Tsakeng4Maurice Marcel Sandeu5Magellan Tchouakui6Charles Sinclair Wondji7Centre for Research in Infectious Diseases (CRID)Centre for Research in Infectious Diseases (CRID)Centre for Research in Infectious Diseases (CRID)Centre for Research in Infectious Diseases (CRID)Vector Biology Department, Liverpool School of Tropical MedicineCentre for Research in Infectious Diseases (CRID)Centre for Research in Infectious Diseases (CRID)Centre for Research in Infectious Diseases (CRID)Abstract Background Exacerbation of pyrethroid resistance severely jeopardises the effectiveness of malaria vector control efforts. However, the mechanisms enabling the vectors to now survive exposure to very high doses of pyrethroids remain unclear. Here, using High-throughput sequencing of the 16 S ribosomal RNA gene coupled with antibiotic treatment, we provide evidence linking the mosquito microbiome to the escalation of pyrethroid resistance in major African malaria vectors, Anopheles gambiae (s.s.) and Anopheles funestus (s.s.). Results Phenotypic characterisation of An. gambiae (s.s.) and An. funestus (s.s.) populations revealed a high level of resistance to pyrethroid in both species, with mortality rates < 91% at 10x the diagnostic dose of each insecticide. A significant difference in bacterial composition was observed in An. gambiae s.s. between resistant mosquitoes exposed to 1X and 10X the diagnostic dose of permethrin, and the susceptible strains (PERMANOVA-F: 8.06; p = 0.02). The abundance of Pseudomonas_1 (Log2FC: 4.42, p = 0.0001) and Burkholderia_1 (Log2FC: 4.95, p = 0.001) bacteria were consistently associated with mosquitoes surviving 1X and 10X the diagnostic concentrations of permethrin, respectively, while Serratia_2 bacteria was mostly associated with insecticide susceptibility. In the An. funestus s.s. strain, there was no significant difference in bacterial alpha- and beta-diversity between the FUMOZ-R (exhibiting normal deltamethrin resistance) and FUMOZ-HR (selected for high deltamethrin resistance), suggesting a minimal impact of selection pressure on bacterial composition. However, in FUMOZ-HR, there was an increase in the abundance of Rahnella (Log2FC: 15.954, p = 9.73 E-12) and Leucobacter (Log2FC: 7.6, p = 0.008) bacteria, indicating their potential role in worsening deltamethrin resistance. Furthermore, treating resistant mosquitoes (both Anopheles species) with broad-spectrum bactericidal antibiotics (penicillin/streptomycin) via sugar solution increased their susceptibility to various diagnostic doses of permethrin and deltamethrin in WHO pyrethroid intensity bioassays. Conclusion Overall, our study emphasises the potential role of the microbiome in the escalation of insecticide resistance in Anopheles mosquitoes, identifying key bacterial strains associated with insecticide resistance and susceptibility. These candidate bacteria warrant further investigation to elucidate the mechanisms by which they contribute to the escalation of pyrethroid resistance.https://doi.org/10.1186/s12866-025-04114-0MalariaMicrobiomePyrethroidsResistance escalationAn. funestus s.s.An. gambiae s.s
spellingShingle Fleuriane Metissa Djondji Kamga
Leon M. Jean Mugenzi
Vanessa Brigitte Ngannang-Fezeu
François Sougal Ngambia Freitas
Calmes Ursain Bouaka Tsakeng
Maurice Marcel Sandeu
Magellan Tchouakui
Charles Sinclair Wondji
Evidence of microbiome contribution to the escalation of pyrethroid resistance in the major malaria vectors Anopheles gambiae s.s. and Anopheles funestus s.s
BMC Microbiology
Malaria
Microbiome
Pyrethroids
Resistance escalation
An. funestus s.s.
An. gambiae s.s
title Evidence of microbiome contribution to the escalation of pyrethroid resistance in the major malaria vectors Anopheles gambiae s.s. and Anopheles funestus s.s
title_full Evidence of microbiome contribution to the escalation of pyrethroid resistance in the major malaria vectors Anopheles gambiae s.s. and Anopheles funestus s.s
title_fullStr Evidence of microbiome contribution to the escalation of pyrethroid resistance in the major malaria vectors Anopheles gambiae s.s. and Anopheles funestus s.s
title_full_unstemmed Evidence of microbiome contribution to the escalation of pyrethroid resistance in the major malaria vectors Anopheles gambiae s.s. and Anopheles funestus s.s
title_short Evidence of microbiome contribution to the escalation of pyrethroid resistance in the major malaria vectors Anopheles gambiae s.s. and Anopheles funestus s.s
title_sort evidence of microbiome contribution to the escalation of pyrethroid resistance in the major malaria vectors anopheles gambiae s s and anopheles funestus s s
topic Malaria
Microbiome
Pyrethroids
Resistance escalation
An. funestus s.s.
An. gambiae s.s
url https://doi.org/10.1186/s12866-025-04114-0
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