Identification of Critical Candidate Genes Controlling Monokaryon Fruiting in <i>Flammulina filiformis</i> Using Genetic Population Construction and Bulked Segregant Analysis Sequencing

Fruiting body formation in edible fungi is a critical development process for both scientific understanding and industrial cultivation, yet the underlying genetic mechanisms remain poorly elucidated. This study aimed to identify key genes regulating monokaryotic fruiting in <i>Flammulina filif...

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Main Authors: Peng Wang, Ya Yu, Lei Xia, Qi Yan, Xiao Tan, Dongyin Wang, Xue Wang, Zhibin Zhang, Jiawei Wen, Xiao Huang
Format: Article
Language:English
Published: MDPI AG 2025-07-01
Series:Journal of Fungi
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Online Access:https://www.mdpi.com/2309-608X/11/7/512
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Summary:Fruiting body formation in edible fungi is a critical development process for both scientific understanding and industrial cultivation, yet the underlying genetic mechanisms remain poorly elucidated. This study aimed to identify key genes regulating monokaryotic fruiting in <i>Flammulina filiformis</i>. A genetic segregation population was constructed through selfing purification and hybrid segregation of the FF002 strain, followed by mapping candidate genes with bulked segregant analysis sequencing (BSA-seq). A 10 kb genomic region on scaffold19 was identified, pinpointing the gene <i>FV-L110034160</i>, which encodes a U2 snRNP complex component involved in pre-mRNA splicing. A T→G SNP located 121 bp downstream of the ATG codon caused a serine-to-alanine substitution, disrupting a conserved domain and altering fruiting phenotypes. Phylogenetic analysis further revealed conservation of this gene in fungal genera. These findings elucidate a key regulatory gene controlling monokaryotic fruiting in <i>F. filiformis</i>, providing novel insights into fruiting body formation mechanisms and establishing a foundation for genetic studies in other edible fungi.
ISSN:2309-608X