Insights from a Genome-Wide Study of <i>Pantoea agglomerans</i> UADEC20: A Promising Strain for Phosphate Solubilization and Exopolysaccharides Production
The genome sequence of <i>Pantoea agglomerans</i> UADEC20 is presented, which is a strain isolated from agricultural fields in northeast Mexico. The genome was assembled into 13 scaffolds, constituting a total chromosome size of 4.2 Mbp, with two of the scaffolds representing closed plas...
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2025-01-01
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| author | Edith Elizondo-Reyna Humberto Martínez-Montoya Yahaira Tamayo-Ordoñez María Antonia Cruz-Hernández Mauricio Carrillo-Tripp María Concepción Tamayo-Ordoñez Gerardo de Jesús Sosa-Santillán José Antonio Rodríguez-de la Garza Mario Hernández-Guzmán Virgilio Bocanegra-García Erika Acosta-Cruz |
| author_facet | Edith Elizondo-Reyna Humberto Martínez-Montoya Yahaira Tamayo-Ordoñez María Antonia Cruz-Hernández Mauricio Carrillo-Tripp María Concepción Tamayo-Ordoñez Gerardo de Jesús Sosa-Santillán José Antonio Rodríguez-de la Garza Mario Hernández-Guzmán Virgilio Bocanegra-García Erika Acosta-Cruz |
| author_sort | Edith Elizondo-Reyna |
| collection | DOAJ |
| description | The genome sequence of <i>Pantoea agglomerans</i> UADEC20 is presented, which is a strain isolated from agricultural fields in northeast Mexico. The genome was assembled into 13 scaffolds, constituting a total chromosome size of 4.2 Mbp, with two of the scaffolds representing closed plasmids. The strain exhibits activity in phosphate solubilization and exopolysaccharide (EPS) production and secretion; therefore, we explored its biotechnological potential via its genome sequencing and annotation. Genomic analyses showed that a total of 57 and 58 coding sequences (CDSs) related to phosphate solubilization and EPS production were identified within its genome, in addition to a reduced number of CDSs related to drug resistance and phages. The comprehensive set of genes supporting phosphate solubilization, EPS synthesis, and secretion, along with its low virulence and antibiotic resistance levels, justify further research for its potential biotechnological application and possible use as a plant growth-promoting agent in the field. These findings suggest a unique genetic background in the <i>P</i>. <i>agglomerans</i> UADEC20 strain. |
| format | Article |
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| institution | Kabale University |
| issn | 1467-3037 1467-3045 |
| language | English |
| publishDate | 2025-01-01 |
| publisher | MDPI AG |
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| series | Current Issues in Molecular Biology |
| spelling | doaj-art-54eb18508850440fa333f6302bbf6c9c2025-01-24T13:27:34ZengMDPI AGCurrent Issues in Molecular Biology1467-30371467-30452025-01-014715610.3390/cimb47010056Insights from a Genome-Wide Study of <i>Pantoea agglomerans</i> UADEC20: A Promising Strain for Phosphate Solubilization and Exopolysaccharides ProductionEdith Elizondo-Reyna0Humberto Martínez-Montoya1Yahaira Tamayo-Ordoñez2María Antonia Cruz-Hernández3Mauricio Carrillo-Tripp4María Concepción Tamayo-Ordoñez5Gerardo de Jesús Sosa-Santillán6José Antonio Rodríguez-de la Garza7Mario Hernández-Guzmán8Virgilio Bocanegra-García9Erika Acosta-Cruz10Departamento de Biotecnología, Facultad de Ciencias Químicas, Universidad Autónoma de Coahuila, Saltillo C.P. 25280, MexicoDepartamento de Microbiología, U.A.M. Reynosa Aztlán, Universidad Autónoma de Tamaulipas, Reynosa C.P. 88740, MexicoLaboratorio Interacción Ambiente-Microorganismo, Centro de Biotecnología Genómica, Instituto Politécnico Nacional, Reynosa C.P. 88710, MexicoLaboratorio Interacción Ambiente-Microorganismo, Centro de Biotecnología Genómica, Instituto Politécnico Nacional, Reynosa C.P. 88710, MexicoBiomolecular Diversity Laboratory, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Unidad Monterrey, Vía del Conocimiento 201, PIIT, Apodaca C.P. 66600, MexicoDepartamento de Biotecnología, Facultad de Ciencias Químicas, Universidad Autónoma de Coahuila, Saltillo C.P. 25280, MexicoDepartamento de Biotecnología, Facultad de Ciencias Químicas, Universidad Autónoma de Coahuila, Saltillo C.P. 25280, MexicoDepartamento de Biotecnología, Facultad de Ciencias Químicas, Universidad Autónoma de Coahuila, Saltillo C.P. 25280, MexicoDepartamento de Innovación Biomédica, Centro de Investigación Científica y de Educación Superior de Ensenada (CICESE), Ensenada C.P. 22860, MexicoLaboratorio Interacción Ambiente-Microorganismo, Centro de Biotecnología Genómica, Instituto Politécnico Nacional, Reynosa C.P. 88710, MexicoDepartamento de Biotecnología, Facultad de Ciencias Químicas, Universidad Autónoma de Coahuila, Saltillo C.P. 25280, MexicoThe genome sequence of <i>Pantoea agglomerans</i> UADEC20 is presented, which is a strain isolated from agricultural fields in northeast Mexico. The genome was assembled into 13 scaffolds, constituting a total chromosome size of 4.2 Mbp, with two of the scaffolds representing closed plasmids. The strain exhibits activity in phosphate solubilization and exopolysaccharide (EPS) production and secretion; therefore, we explored its biotechnological potential via its genome sequencing and annotation. Genomic analyses showed that a total of 57 and 58 coding sequences (CDSs) related to phosphate solubilization and EPS production were identified within its genome, in addition to a reduced number of CDSs related to drug resistance and phages. The comprehensive set of genes supporting phosphate solubilization, EPS synthesis, and secretion, along with its low virulence and antibiotic resistance levels, justify further research for its potential biotechnological application and possible use as a plant growth-promoting agent in the field. These findings suggest a unique genetic background in the <i>P</i>. <i>agglomerans</i> UADEC20 strain.https://www.mdpi.com/1467-3045/47/1/56PGPRgenome<i>Pantoea agglomerans</i>phosphate solubilizationexopolysaccharide production |
| spellingShingle | Edith Elizondo-Reyna Humberto Martínez-Montoya Yahaira Tamayo-Ordoñez María Antonia Cruz-Hernández Mauricio Carrillo-Tripp María Concepción Tamayo-Ordoñez Gerardo de Jesús Sosa-Santillán José Antonio Rodríguez-de la Garza Mario Hernández-Guzmán Virgilio Bocanegra-García Erika Acosta-Cruz Insights from a Genome-Wide Study of <i>Pantoea agglomerans</i> UADEC20: A Promising Strain for Phosphate Solubilization and Exopolysaccharides Production Current Issues in Molecular Biology PGPR genome <i>Pantoea agglomerans</i> phosphate solubilization exopolysaccharide production |
| title | Insights from a Genome-Wide Study of <i>Pantoea agglomerans</i> UADEC20: A Promising Strain for Phosphate Solubilization and Exopolysaccharides Production |
| title_full | Insights from a Genome-Wide Study of <i>Pantoea agglomerans</i> UADEC20: A Promising Strain for Phosphate Solubilization and Exopolysaccharides Production |
| title_fullStr | Insights from a Genome-Wide Study of <i>Pantoea agglomerans</i> UADEC20: A Promising Strain for Phosphate Solubilization and Exopolysaccharides Production |
| title_full_unstemmed | Insights from a Genome-Wide Study of <i>Pantoea agglomerans</i> UADEC20: A Promising Strain for Phosphate Solubilization and Exopolysaccharides Production |
| title_short | Insights from a Genome-Wide Study of <i>Pantoea agglomerans</i> UADEC20: A Promising Strain for Phosphate Solubilization and Exopolysaccharides Production |
| title_sort | insights from a genome wide study of i pantoea agglomerans i uadec20 a promising strain for phosphate solubilization and exopolysaccharides production |
| topic | PGPR genome <i>Pantoea agglomerans</i> phosphate solubilization exopolysaccharide production |
| url | https://www.mdpi.com/1467-3045/47/1/56 |
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