Soil Fungal Community Responses to the Silver Nanoparticles Contamination as Assessed by Illumina Next Generation Sequencing (NGS)
The increasing use of silver nanoparticles (AgNPs) due to its excellent antimicrobial activity in commercial products prompting concerns about their fate in the environment. The toxicity of AgNPs is mainly the result of Ag+ ions. In this study, soil was experimentally contaminated with 100 mg kg-1 o...
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| Format: | Article |
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Universitas Syiah Kuala, Chemical Engineering Department
2020-08-01
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| Series: | Jurnal Rekayasa Kimia & Lingkungan |
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| Online Access: | https://jurnal.usk.ac.id/RKL/article/view/16025 |
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| author | Hartati Oktarina Ian Singleton |
| author_facet | Hartati Oktarina Ian Singleton |
| author_sort | Hartati Oktarina |
| collection | DOAJ |
| description | The increasing use of silver nanoparticles (AgNPs) due to its excellent antimicrobial activity in commercial products prompting concerns about their fate in the environment. The toxicity of AgNPs is mainly the result of Ag+ ions. In this study, soil was experimentally contaminated with 100 mg kg-1 of AgNO3 to investigate its effect on fungal soil community. Deoxyribonucleic acid (DNA) from the soil was extracted at the 6th, 12th, and 24th month of observation and assessed by Illumina Next Generation Sequencing (NGS). The results show that, the pollutant change fungal community in soil. After 12 months incubated the number of fungal species in the soil reduced significantly and 40% of the community was dominated by one species. |
| format | Article |
| id | doaj-art-549228fced434a7fa0a68079495e76bf |
| institution | Kabale University |
| issn | 1412-5064 2356-1661 |
| language | English |
| publishDate | 2020-08-01 |
| publisher | Universitas Syiah Kuala, Chemical Engineering Department |
| record_format | Article |
| series | Jurnal Rekayasa Kimia & Lingkungan |
| spelling | doaj-art-549228fced434a7fa0a68079495e76bf2025-08-20T03:50:32ZengUniversitas Syiah Kuala, Chemical Engineering DepartmentJurnal Rekayasa Kimia & Lingkungan1412-50642356-16612020-08-011529910310.23955/rkl.v15i2.1602511461Soil Fungal Community Responses to the Silver Nanoparticles Contamination as Assessed by Illumina Next Generation Sequencing (NGS)Hartati Oktarina0Ian Singleton1universitas Syiah KualaEdinburgh Napier University, Edinburgh, United KingdomThe increasing use of silver nanoparticles (AgNPs) due to its excellent antimicrobial activity in commercial products prompting concerns about their fate in the environment. The toxicity of AgNPs is mainly the result of Ag+ ions. In this study, soil was experimentally contaminated with 100 mg kg-1 of AgNO3 to investigate its effect on fungal soil community. Deoxyribonucleic acid (DNA) from the soil was extracted at the 6th, 12th, and 24th month of observation and assessed by Illumina Next Generation Sequencing (NGS). The results show that, the pollutant change fungal community in soil. After 12 months incubated the number of fungal species in the soil reduced significantly and 40% of the community was dominated by one species.https://jurnal.usk.ac.id/RKL/article/view/16025agnps, soil contamination, metal pollution, illumine miseq, uparse pipeline |
| spellingShingle | Hartati Oktarina Ian Singleton Soil Fungal Community Responses to the Silver Nanoparticles Contamination as Assessed by Illumina Next Generation Sequencing (NGS) Jurnal Rekayasa Kimia & Lingkungan agnps, soil contamination, metal pollution, illumine miseq, uparse pipeline |
| title | Soil Fungal Community Responses to the Silver Nanoparticles Contamination as Assessed by Illumina Next Generation Sequencing (NGS) |
| title_full | Soil Fungal Community Responses to the Silver Nanoparticles Contamination as Assessed by Illumina Next Generation Sequencing (NGS) |
| title_fullStr | Soil Fungal Community Responses to the Silver Nanoparticles Contamination as Assessed by Illumina Next Generation Sequencing (NGS) |
| title_full_unstemmed | Soil Fungal Community Responses to the Silver Nanoparticles Contamination as Assessed by Illumina Next Generation Sequencing (NGS) |
| title_short | Soil Fungal Community Responses to the Silver Nanoparticles Contamination as Assessed by Illumina Next Generation Sequencing (NGS) |
| title_sort | soil fungal community responses to the silver nanoparticles contamination as assessed by illumina next generation sequencing ngs |
| topic | agnps, soil contamination, metal pollution, illumine miseq, uparse pipeline |
| url | https://jurnal.usk.ac.id/RKL/article/view/16025 |
| work_keys_str_mv | AT hartatioktarina soilfungalcommunityresponsestothesilvernanoparticlescontaminationasassessedbyilluminanextgenerationsequencingngs AT iansingleton soilfungalcommunityresponsestothesilvernanoparticlescontaminationasassessedbyilluminanextgenerationsequencingngs |