The chromosomal genome sequence of the kidney sponge, Chondrosia reniformis Nardo, 1847, and its associated microbial metagenome sequences [version 1; peer review: 2 approved, 1 approved with reservations]
We present a genome assembly from a specimen of Chondrosia reniformis (kidney sponge; Porifera; Demospongiae; Chondrillida; Chondrillidae). The genome sequence has a total length of 117.37 megabases. Most of the assembly (99.98%) is scaffolded into 14 chromosomal pseudomolecules. The mitochondrial g...
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2025-05-01
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| Online Access: | https://wellcomeopenresearch.org/articles/10-283/v1 |
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| author | Vassiliki Koutsouveli Eerik Aunin Camilla Santos Victoria McKenna Ute Hentschel Lucia Pita Manuel Maldonado Elizabeth Sinclair Ana Riesgo Graeme Oatley Haoyu Niu Noah Gettle Michael Paulini Rebecca O’Brien |
| author_facet | Vassiliki Koutsouveli Eerik Aunin Camilla Santos Victoria McKenna Ute Hentschel Lucia Pita Manuel Maldonado Elizabeth Sinclair Ana Riesgo Graeme Oatley Haoyu Niu Noah Gettle Michael Paulini Rebecca O’Brien |
| author_sort | Vassiliki Koutsouveli |
| collection | DOAJ |
| description | We present a genome assembly from a specimen of Chondrosia reniformis (kidney sponge; Porifera; Demospongiae; Chondrillida; Chondrillidae). The genome sequence has a total length of 117.37 megabases. Most of the assembly (99.98%) is scaffolded into 14 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 17.45 kilobases in length. Several symbiotic bacterial genomes were assembled as MAGs. Gene annotation of the host organism assembly on Ensembl identified 17,340 protein-coding genes. The metagenome of the specimen was also assembled and 53 binned bacterial genomes were identified, including 40 high-quality MAGs that were representative of a typical high microbial abundance sponge and included three candiate phyla (Poribacteria, Latescibacteria, Binatota) |
| format | Article |
| id | doaj-art-511d324d8fd047abb627293c143b11dd |
| institution | OA Journals |
| issn | 2398-502X |
| language | English |
| publishDate | 2025-05-01 |
| publisher | Wellcome |
| record_format | Article |
| series | Wellcome Open Research |
| spelling | doaj-art-511d324d8fd047abb627293c143b11dd2025-08-20T02:10:09ZengWellcomeWellcome Open Research2398-502X2025-05-011010.12688/wellcomeopenres.24166.126657The chromosomal genome sequence of the kidney sponge, Chondrosia reniformis Nardo, 1847, and its associated microbial metagenome sequences [version 1; peer review: 2 approved, 1 approved with reservations]Vassiliki Koutsouveli0Eerik Aunin1Camilla Santos2Victoria McKenna3Ute Hentschel4https://orcid.org/0000-0003-0596-790XLucia Pita5https://orcid.org/0000-0003-0163-1587Manuel Maldonado6https://orcid.org/0000-0002-7447-4212Elizabeth Sinclair7https://orcid.org/0009-0004-3133-537XAna Riesgo8Graeme Oatley9https://orcid.org/0000-0003-0896-9994Haoyu Niu10Noah Gettle11Michael Paulini12Rebecca O’Brien13https://orcid.org/0009-0008-5433-3202GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, GermanyTree of Life, Wellcome Sanger Institute, Hinxton, England, UKTree of Life, Wellcome Sanger Institute, Hinxton, England, UKTree of Life, Wellcome Sanger Institute, Hinxton, England, UKRU Marine Symbioses, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, GermanyInstitute of Marine Sciences – CSIC, Barcelona, SpainDepartment of Marine Ecology, Center for Advanced Studies of Blanes (CEAB-CSIC), Girona, SpainTree of Life, Wellcome Sanger Institute, Hinxton, England, UKMNCN-National Museum of Natural Sciences, Department of Biodiversity and Evolutionary Biology, Madrid, SpainTree of Life, Wellcome Sanger Institute, Hinxton, England, UKTree of Life, Wellcome Sanger Institute, Hinxton, England, UKTree of Life, Wellcome Sanger Institute, Hinxton, England, UKTree of Life, Wellcome Sanger Institute, Hinxton, England, UKTree of Life, Wellcome Sanger Institute, Hinxton, England, UKWe present a genome assembly from a specimen of Chondrosia reniformis (kidney sponge; Porifera; Demospongiae; Chondrillida; Chondrillidae). The genome sequence has a total length of 117.37 megabases. Most of the assembly (99.98%) is scaffolded into 14 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 17.45 kilobases in length. Several symbiotic bacterial genomes were assembled as MAGs. Gene annotation of the host organism assembly on Ensembl identified 17,340 protein-coding genes. The metagenome of the specimen was also assembled and 53 binned bacterial genomes were identified, including 40 high-quality MAGs that were representative of a typical high microbial abundance sponge and included three candiate phyla (Poribacteria, Latescibacteria, Binatota)https://wellcomeopenresearch.org/articles/10-283/v1Chondrosia reniformis kidney sponge genome sequence chromosomal Chondrillida; microbial metagenomeeng |
| spellingShingle | Vassiliki Koutsouveli Eerik Aunin Camilla Santos Victoria McKenna Ute Hentschel Lucia Pita Manuel Maldonado Elizabeth Sinclair Ana Riesgo Graeme Oatley Haoyu Niu Noah Gettle Michael Paulini Rebecca O’Brien The chromosomal genome sequence of the kidney sponge, Chondrosia reniformis Nardo, 1847, and its associated microbial metagenome sequences [version 1; peer review: 2 approved, 1 approved with reservations] Wellcome Open Research Chondrosia reniformis kidney sponge genome sequence chromosomal Chondrillida; microbial metagenome eng |
| title | The chromosomal genome sequence of the kidney sponge, Chondrosia reniformis Nardo, 1847, and its associated microbial metagenome sequences [version 1; peer review: 2 approved, 1 approved with reservations] |
| title_full | The chromosomal genome sequence of the kidney sponge, Chondrosia reniformis Nardo, 1847, and its associated microbial metagenome sequences [version 1; peer review: 2 approved, 1 approved with reservations] |
| title_fullStr | The chromosomal genome sequence of the kidney sponge, Chondrosia reniformis Nardo, 1847, and its associated microbial metagenome sequences [version 1; peer review: 2 approved, 1 approved with reservations] |
| title_full_unstemmed | The chromosomal genome sequence of the kidney sponge, Chondrosia reniformis Nardo, 1847, and its associated microbial metagenome sequences [version 1; peer review: 2 approved, 1 approved with reservations] |
| title_short | The chromosomal genome sequence of the kidney sponge, Chondrosia reniformis Nardo, 1847, and its associated microbial metagenome sequences [version 1; peer review: 2 approved, 1 approved with reservations] |
| title_sort | chromosomal genome sequence of the kidney sponge chondrosia reniformis nardo 1847 and its associated microbial metagenome sequences version 1 peer review 2 approved 1 approved with reservations |
| topic | Chondrosia reniformis kidney sponge genome sequence chromosomal Chondrillida; microbial metagenome eng |
| url | https://wellcomeopenresearch.org/articles/10-283/v1 |
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