Some Software’s Used in DNA Sequencing Based Haplotype Analysis
Determination of genetic resources and their diversity constitutes are the initial step of the breeding programs. Before starting to the selection of the desired properties, many molecular methods are used to determine the existing genetic potential and determine the genotypic values. Many molecular...
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| Language: | English |
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Hasan Eleroğlu
2019-12-01
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| Series: | Turkish Journal of Agriculture: Food Science and Technology |
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| Online Access: | http://www.agrifoodscience.com/index.php/TURJAF/article/view/2753 |
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| author | Emel Tüten Sevim Kemal Karabağ |
| author_facet | Emel Tüten Sevim Kemal Karabağ |
| author_sort | Emel Tüten Sevim |
| collection | DOAJ |
| description | Determination of genetic resources and their diversity constitutes are the initial step of the breeding programs. Before starting to the selection of the desired properties, many molecular methods are used to determine the existing genetic potential and determine the genotypic values. Many molecular methods (RAPD, RFLP, AFLP, SSR and DNA sequencing etc.) based on PCR technology are used to identify populations, identify genes related to yield and resistance, and demonstrate phylogenetic relationships. Many software’s for the analysis of molecular datasets obtained from molecular methods have been developed and the field of bioinformatics was born. In this study, after DNA sequence analysis; it is aimed to give information about haplotype analysis by determining SNPs (Single Nucleotide Polymorphism's) in individuals of populations, calculation of the genetic distance among populations and within populations, and software and analysis used for phylogenetic tree drawing. |
| format | Article |
| id | doaj-art-4e4edc2baf2844e0ac94a3240d605739 |
| institution | OA Journals |
| issn | 2148-127X |
| language | English |
| publishDate | 2019-12-01 |
| publisher | Hasan Eleroğlu |
| record_format | Article |
| series | Turkish Journal of Agriculture: Food Science and Technology |
| spelling | doaj-art-4e4edc2baf2844e0ac94a3240d6057392025-08-20T02:38:46ZengHasan EleroğluTurkish Journal of Agriculture: Food Science and Technology2148-127X2019-12-017sp110710910.24925/turjaf.v7isp1.107-109.27531352Some Software’s Used in DNA Sequencing Based Haplotype AnalysisEmel Tüten Sevim0Kemal Karabağ1Department of Agricultural Biotechnology, Faculty of Agriculture, Akdeniz University, 07070 AntalyaDepartment of Agricultural Biotechnology, Faculty of Agriculture, Akdeniz University, 07070 AntalyaDetermination of genetic resources and their diversity constitutes are the initial step of the breeding programs. Before starting to the selection of the desired properties, many molecular methods are used to determine the existing genetic potential and determine the genotypic values. Many molecular methods (RAPD, RFLP, AFLP, SSR and DNA sequencing etc.) based on PCR technology are used to identify populations, identify genes related to yield and resistance, and demonstrate phylogenetic relationships. Many software’s for the analysis of molecular datasets obtained from molecular methods have been developed and the field of bioinformatics was born. In this study, after DNA sequence analysis; it is aimed to give information about haplotype analysis by determining SNPs (Single Nucleotide Polymorphism's) in individuals of populations, calculation of the genetic distance among populations and within populations, and software and analysis used for phylogenetic tree drawing.http://www.agrifoodscience.com/index.php/TURJAF/article/view/2753genetik varyasyonsnphaplotipyazılımfilogenetik |
| spellingShingle | Emel Tüten Sevim Kemal Karabağ Some Software’s Used in DNA Sequencing Based Haplotype Analysis Turkish Journal of Agriculture: Food Science and Technology genetik varyasyon snp haplotip yazılım filogenetik |
| title | Some Software’s Used in DNA Sequencing Based Haplotype Analysis |
| title_full | Some Software’s Used in DNA Sequencing Based Haplotype Analysis |
| title_fullStr | Some Software’s Used in DNA Sequencing Based Haplotype Analysis |
| title_full_unstemmed | Some Software’s Used in DNA Sequencing Based Haplotype Analysis |
| title_short | Some Software’s Used in DNA Sequencing Based Haplotype Analysis |
| title_sort | some software s used in dna sequencing based haplotype analysis |
| topic | genetik varyasyon snp haplotip yazılım filogenetik |
| url | http://www.agrifoodscience.com/index.php/TURJAF/article/view/2753 |
| work_keys_str_mv | AT emeltutensevim somesoftwaresusedindnasequencingbasedhaplotypeanalysis AT kemalkarabag somesoftwaresusedindnasequencingbasedhaplotypeanalysis |