Protocol to profile snATAC-seq datasets and motif enrichment analysis during zebrafish early embryogenesis

Protocol to profile snATAC-seq datasets and motif enrichment analysis during zebrafish early embryogenesis

Summary: The scarcity of zebrafish-specific motif databases presents a challenge to the analysis of transcription factor (TF) motif within zebrafish single-cell assay for transposase-accessible chromatin using sequencing (scATAC-seq) data, thus hindering the identification of regulatory elements thr...

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Bibliographic Details
Main Authors: Jie Zhou, Xueqian Yang, Xiumei Lin, Kaichen Zhao, Xue Wang, Zhiqiang Dong, Chuanyu Liu, Chang Liu
Format: Article
Language:English
Published: Elsevier 2024-12-01
Series:STAR Protocols
Subjects:
bioinformatics
single cell
developmental biology
model organisms
Online Access:http://www.sciencedirect.com/science/article/pii/S266616672400666X
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