Chromosome-level and haplotype-resolved genome assembly of Bougainvillea glabra
Abstract Bougainvillea glabra Choisy, a common perennial shrub or climbing vine in tropical and subtropical areas, has significant ornamental and ecological value due to its showy floriferous blooms and adaptability to multiple environmental stresses. In this study, based on PacBio and Hi-C sequenci...
Saved in:
| Main Authors: | , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Nature Portfolio
2025-01-01
|
| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-024-04333-6 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1832594964784087040 |
|---|---|
| author | Lan Lan Haiyan Li Shisong Xu Yueting Xu Qingyun Leng Linbi Zhang Linqiao Wu Junmei Yin Zhiqiang Wu Junhai Niu |
| author_facet | Lan Lan Haiyan Li Shisong Xu Yueting Xu Qingyun Leng Linbi Zhang Linqiao Wu Junmei Yin Zhiqiang Wu Junhai Niu |
| author_sort | Lan Lan |
| collection | DOAJ |
| description | Abstract Bougainvillea glabra Choisy, a common perennial shrub or climbing vine in tropical and subtropical areas, has significant ornamental and ecological value due to its showy floriferous blooms and adaptability to multiple environmental stresses. In this study, based on PacBio and Hi-C sequencing data, we presented the haplotype-resolved, and chromosome-level assembled genomes for B. glabra (2n = 34). We obtained two haplotypes with genome size of 2,855,692,602 bp and 2,889,511,499 bp, N50 of 165 Mbp and 167 Mbp, and both anchored to 17 chromosomes with anchor ratio of 97.07% and 97.55%, respectively. Through the BUSCO evaluation process, the two assembled haplotypes both exhibited the high score of 96%. By combining the high-confidence different evidence of genome structure annotation pipeline we annotated each haplotype containing ~33,000 predicted genes, of which 86% were functionally annotated by different databases. These high-quality haplotypes assembly and annotation results will serve as a great genomic resource to explore the ornamental traits and environmental adaptability and accelerate improvement in future. |
| format | Article |
| id | doaj-art-410ae06adc10435fb4eacab568de36ca |
| institution | Kabale University |
| issn | 2052-4463 |
| language | English |
| publishDate | 2025-01-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj-art-410ae06adc10435fb4eacab568de36ca2025-01-19T12:09:37ZengNature PortfolioScientific Data2052-44632025-01-011211710.1038/s41597-024-04333-6Chromosome-level and haplotype-resolved genome assembly of Bougainvillea glabraLan Lan0Haiyan Li1Shisong Xu2Yueting Xu3Qingyun Leng4Linbi Zhang5Linqiao Wu6Junmei Yin7Zhiqiang Wu8Junhai Niu9National Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural SciencesNational Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural SciencesNational Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural SciencesNational Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural SciencesNational Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural SciencesHainan Daxin Landscape Co., LtdHainan Big Lake Bridge Technology Co., LtdNational Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural SciencesShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural SciencesNational Key Laboratory for Tropical Crop Breeding / Key Laboratory of Gene Resources and Germplasm Enhancement in Southern China, MARA / Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural SciencesAbstract Bougainvillea glabra Choisy, a common perennial shrub or climbing vine in tropical and subtropical areas, has significant ornamental and ecological value due to its showy floriferous blooms and adaptability to multiple environmental stresses. In this study, based on PacBio and Hi-C sequencing data, we presented the haplotype-resolved, and chromosome-level assembled genomes for B. glabra (2n = 34). We obtained two haplotypes with genome size of 2,855,692,602 bp and 2,889,511,499 bp, N50 of 165 Mbp and 167 Mbp, and both anchored to 17 chromosomes with anchor ratio of 97.07% and 97.55%, respectively. Through the BUSCO evaluation process, the two assembled haplotypes both exhibited the high score of 96%. By combining the high-confidence different evidence of genome structure annotation pipeline we annotated each haplotype containing ~33,000 predicted genes, of which 86% were functionally annotated by different databases. These high-quality haplotypes assembly and annotation results will serve as a great genomic resource to explore the ornamental traits and environmental adaptability and accelerate improvement in future.https://doi.org/10.1038/s41597-024-04333-6 |
| spellingShingle | Lan Lan Haiyan Li Shisong Xu Yueting Xu Qingyun Leng Linbi Zhang Linqiao Wu Junmei Yin Zhiqiang Wu Junhai Niu Chromosome-level and haplotype-resolved genome assembly of Bougainvillea glabra Scientific Data |
| title | Chromosome-level and haplotype-resolved genome assembly of Bougainvillea glabra |
| title_full | Chromosome-level and haplotype-resolved genome assembly of Bougainvillea glabra |
| title_fullStr | Chromosome-level and haplotype-resolved genome assembly of Bougainvillea glabra |
| title_full_unstemmed | Chromosome-level and haplotype-resolved genome assembly of Bougainvillea glabra |
| title_short | Chromosome-level and haplotype-resolved genome assembly of Bougainvillea glabra |
| title_sort | chromosome level and haplotype resolved genome assembly of bougainvillea glabra |
| url | https://doi.org/10.1038/s41597-024-04333-6 |
| work_keys_str_mv | AT lanlan chromosomelevelandhaplotyperesolvedgenomeassemblyofbougainvilleaglabra AT haiyanli chromosomelevelandhaplotyperesolvedgenomeassemblyofbougainvilleaglabra AT shisongxu chromosomelevelandhaplotyperesolvedgenomeassemblyofbougainvilleaglabra AT yuetingxu chromosomelevelandhaplotyperesolvedgenomeassemblyofbougainvilleaglabra AT qingyunleng chromosomelevelandhaplotyperesolvedgenomeassemblyofbougainvilleaglabra AT linbizhang chromosomelevelandhaplotyperesolvedgenomeassemblyofbougainvilleaglabra AT linqiaowu chromosomelevelandhaplotyperesolvedgenomeassemblyofbougainvilleaglabra AT junmeiyin chromosomelevelandhaplotyperesolvedgenomeassemblyofbougainvilleaglabra AT zhiqiangwu chromosomelevelandhaplotyperesolvedgenomeassemblyofbougainvilleaglabra AT junhainiu chromosomelevelandhaplotyperesolvedgenomeassemblyofbougainvilleaglabra |