Genome-wide identification of YABBY gene family and its expression pattern analysis in Astragalus mongholicus
During plant growth and development, the YABBY gene plays a crucial role in the morphological structure, hormone signaling, stress resistance, crop breeding, and agricultural production of plant lateral organs, leaves, flowers, and fruits. Astragalus mongholicus is a perennial herbaceous plant in th...
Saved in:
| Main Authors: | , , , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2024-12-01
|
| Series: | Plant Signaling & Behavior |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/15592324.2024.2355740 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1846095005040508928 |
|---|---|
| author | Jiamei Wang Zhen Wang Panpan Wang Jianhao Wu Lingyang Kong Lengleng Ma Shan Jiang Weichao Ren Weili Liu Yanli Guo Wei Ma Xiubo Liu |
| author_facet | Jiamei Wang Zhen Wang Panpan Wang Jianhao Wu Lingyang Kong Lengleng Ma Shan Jiang Weichao Ren Weili Liu Yanli Guo Wei Ma Xiubo Liu |
| author_sort | Jiamei Wang |
| collection | DOAJ |
| description | During plant growth and development, the YABBY gene plays a crucial role in the morphological structure, hormone signaling, stress resistance, crop breeding, and agricultural production of plant lateral organs, leaves, flowers, and fruits. Astragalus mongholicus is a perennial herbaceous plant in the legume family, widely used worldwide due to its high medicinal and edible value. However, there have been no reports of the YABBY gene family in A. mongholicus. This study used bioinformatics methods, combined with databases and analysis websites, to systematically analyze the AmYABBY gene family in the entire genome of A. mongholicus and verified its expression patterns in different tissues of A. mongholicus through transcriptome data and qRT-PCR experiments. A total of seven AmYABBY genes were identified, which can be divided into five subfamilies and distributed on three chromosomes. Two pairs of AmYABBY genes may be involved in fragment duplication on three chromosomes. All AmYABBY proteins have a zinc finger YABBY domain, and members of the same group have similar motif composition and intron – exon structure. In the promoter region of the genes, light-responsive and MeJa-response cis-elements are dominant. AmYABBY is highly expressed in stems and leaves, especially AmYABBY1, AmYABBY2, and AmYABBY3, which play important roles in the growth and development of stems and leaves. The AmYABBY gene family regulates the growth and development of A. mongholicus. In summary, this study provides a theoretical basis for in-depth research on the function of the AmYABBY gene and new insights into the molecular response mechanism of the growth and development of the traditional Chinese medicine A. mongholicus. |
| format | Article |
| id | doaj-art-3a84c054a09f4428a4330d77cdd23ef3 |
| institution | Kabale University |
| issn | 1559-2316 1559-2324 |
| language | English |
| publishDate | 2024-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Plant Signaling & Behavior |
| spelling | doaj-art-3a84c054a09f4428a4330d77cdd23ef32025-01-02T11:44:27ZengTaylor & Francis GroupPlant Signaling & Behavior1559-23161559-23242024-12-0119110.1080/15592324.2024.23557402355740Genome-wide identification of YABBY gene family and its expression pattern analysis in Astragalus mongholicusJiamei Wang0Zhen Wang1Panpan Wang2Jianhao Wu3Lingyang Kong4Lengleng Ma5Shan Jiang6Weichao Ren7Weili Liu8Yanli Guo9Wei Ma10Xiubo Liu11Heilongjiang University of Chinese MedicineHeilongjiang University of Chinese MedicineHeilongjiang University of Chinese MedicineHeilongjiang University of Chinese MedicineHeilongjiang University of Chinese MedicineHeilongjiang University of Chinese MedicineHeilongjiang University of Chinese MedicineHeilongjiang University of Chinese MedicineHeilongjiang University of Chinese MedicineHeilongjiang University of Chinese MedicineHeilongjiang University of Chinese MedicineHeilongjiang University of Chinese MedicineDuring plant growth and development, the YABBY gene plays a crucial role in the morphological structure, hormone signaling, stress resistance, crop breeding, and agricultural production of plant lateral organs, leaves, flowers, and fruits. Astragalus mongholicus is a perennial herbaceous plant in the legume family, widely used worldwide due to its high medicinal and edible value. However, there have been no reports of the YABBY gene family in A. mongholicus. This study used bioinformatics methods, combined with databases and analysis websites, to systematically analyze the AmYABBY gene family in the entire genome of A. mongholicus and verified its expression patterns in different tissues of A. mongholicus through transcriptome data and qRT-PCR experiments. A total of seven AmYABBY genes were identified, which can be divided into five subfamilies and distributed on three chromosomes. Two pairs of AmYABBY genes may be involved in fragment duplication on three chromosomes. All AmYABBY proteins have a zinc finger YABBY domain, and members of the same group have similar motif composition and intron – exon structure. In the promoter region of the genes, light-responsive and MeJa-response cis-elements are dominant. AmYABBY is highly expressed in stems and leaves, especially AmYABBY1, AmYABBY2, and AmYABBY3, which play important roles in the growth and development of stems and leaves. The AmYABBY gene family regulates the growth and development of A. mongholicus. In summary, this study provides a theoretical basis for in-depth research on the function of the AmYABBY gene and new insights into the molecular response mechanism of the growth and development of the traditional Chinese medicine A. mongholicus.http://dx.doi.org/10.1080/15592324.2024.2355740astragalus mongholicusyabby gene familyphylogeneticexpression patternbioinformatics |
| spellingShingle | Jiamei Wang Zhen Wang Panpan Wang Jianhao Wu Lingyang Kong Lengleng Ma Shan Jiang Weichao Ren Weili Liu Yanli Guo Wei Ma Xiubo Liu Genome-wide identification of YABBY gene family and its expression pattern analysis in Astragalus mongholicus Plant Signaling & Behavior astragalus mongholicus yabby gene family phylogenetic expression pattern bioinformatics |
| title | Genome-wide identification of YABBY gene family and its expression pattern analysis in Astragalus mongholicus |
| title_full | Genome-wide identification of YABBY gene family and its expression pattern analysis in Astragalus mongholicus |
| title_fullStr | Genome-wide identification of YABBY gene family and its expression pattern analysis in Astragalus mongholicus |
| title_full_unstemmed | Genome-wide identification of YABBY gene family and its expression pattern analysis in Astragalus mongholicus |
| title_short | Genome-wide identification of YABBY gene family and its expression pattern analysis in Astragalus mongholicus |
| title_sort | genome wide identification of yabby gene family and its expression pattern analysis in astragalus mongholicus |
| topic | astragalus mongholicus yabby gene family phylogenetic expression pattern bioinformatics |
| url | http://dx.doi.org/10.1080/15592324.2024.2355740 |
| work_keys_str_mv | AT jiameiwang genomewideidentificationofyabbygenefamilyanditsexpressionpatternanalysisinastragalusmongholicus AT zhenwang genomewideidentificationofyabbygenefamilyanditsexpressionpatternanalysisinastragalusmongholicus AT panpanwang genomewideidentificationofyabbygenefamilyanditsexpressionpatternanalysisinastragalusmongholicus AT jianhaowu genomewideidentificationofyabbygenefamilyanditsexpressionpatternanalysisinastragalusmongholicus AT lingyangkong genomewideidentificationofyabbygenefamilyanditsexpressionpatternanalysisinastragalusmongholicus AT lenglengma genomewideidentificationofyabbygenefamilyanditsexpressionpatternanalysisinastragalusmongholicus AT shanjiang genomewideidentificationofyabbygenefamilyanditsexpressionpatternanalysisinastragalusmongholicus AT weichaoren genomewideidentificationofyabbygenefamilyanditsexpressionpatternanalysisinastragalusmongholicus AT weililiu genomewideidentificationofyabbygenefamilyanditsexpressionpatternanalysisinastragalusmongholicus AT yanliguo genomewideidentificationofyabbygenefamilyanditsexpressionpatternanalysisinastragalusmongholicus AT weima genomewideidentificationofyabbygenefamilyanditsexpressionpatternanalysisinastragalusmongholicus AT xiuboliu genomewideidentificationofyabbygenefamilyanditsexpressionpatternanalysisinastragalusmongholicus |