The first engkabang jantong (Rubroshorea macrophylla) genome survey dataNCBI GenBank
The engkabang jantong (Rubroshorea macrophylla) is one of the most indispensable tree species for reforestation due to its high survival rate and rapid growth rate. Due to relatively low genetic interest of this tree species, its genomic landscape has since faced scarcity, impeding our further eluci...
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| Format: | Article |
| Language: | English |
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Elsevier
2025-02-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340924012101 |
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| author | Hung Hui Chung Asmeralda Ai Leen Soh Melinda Mei Lin Lau Han Ming Gan Siong Fong Sim Leonard Whye Kit Lim |
| author_facet | Hung Hui Chung Asmeralda Ai Leen Soh Melinda Mei Lin Lau Han Ming Gan Siong Fong Sim Leonard Whye Kit Lim |
| author_sort | Hung Hui Chung |
| collection | DOAJ |
| description | The engkabang jantong (Rubroshorea macrophylla) is one of the most indispensable tree species for reforestation due to its high survival rate and rapid growth rate. Due to relatively low genetic interest of this tree species, its genomic landscape has since faced scarcity, impeding our further elucidation on genes that are involved in expressing its aforementioned superior properties. In this study, we performed genome survey and microsatellite analysis of engkabang jantong. Based on the results, the estimated genome size of this species is 312,071,515 bp with 18.43 % repeated sequences and 1.16 % heterozygosity. BUSCO analysis unearthed that 83.5 % of the contigs are single-copy genes whereas 12.7 % of them are duplicated. Only 2.8 % and 1 % of them are fragmented and missing respectively. The short-read sequencing results obtained from the Illumina platform in this study will be essential to complement the Nanopore long-read sequencing results in hybrid genome assembly endeavors in the near future. |
| format | Article |
| id | doaj-art-36d7bce5f6314df7b87dec6f8d11f03b |
| institution | Kabale University |
| issn | 2352-3409 |
| language | English |
| publishDate | 2025-02-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj-art-36d7bce5f6314df7b87dec6f8d11f03b2025-01-31T05:11:40ZengElsevierData in Brief2352-34092025-02-0158111248The first engkabang jantong (Rubroshorea macrophylla) genome survey dataNCBI GenBankHung Hui Chung0Asmeralda Ai Leen Soh1Melinda Mei Lin Lau2Han Ming Gan3Siong Fong Sim4Leonard Whye Kit Lim5Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, 94300 Kota Samarahan, Sarawak, Malaysia; Corresponding author.Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, 94300 Kota Samarahan, Sarawak, MalaysiaFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, 94300 Kota Samarahan, Sarawak, MalaysiaPatriot Biotech Sdn Bhd, 47500 Subang Jaya, Selangor, Malaysia; Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Geelong, Victoria, AustraliaFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, 94300 Kota Samarahan, Sarawak, MalaysiaFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, 94300 Kota Samarahan, Sarawak, MalaysiaThe engkabang jantong (Rubroshorea macrophylla) is one of the most indispensable tree species for reforestation due to its high survival rate and rapid growth rate. Due to relatively low genetic interest of this tree species, its genomic landscape has since faced scarcity, impeding our further elucidation on genes that are involved in expressing its aforementioned superior properties. In this study, we performed genome survey and microsatellite analysis of engkabang jantong. Based on the results, the estimated genome size of this species is 312,071,515 bp with 18.43 % repeated sequences and 1.16 % heterozygosity. BUSCO analysis unearthed that 83.5 % of the contigs are single-copy genes whereas 12.7 % of them are duplicated. Only 2.8 % and 1 % of them are fragmented and missing respectively. The short-read sequencing results obtained from the Illumina platform in this study will be essential to complement the Nanopore long-read sequencing results in hybrid genome assembly endeavors in the near future.http://www.sciencedirect.com/science/article/pii/S2352340924012101Engkabang jantongRubroshorea macrophyllaGenomic landscapeMicrosatelliteIllumina |
| spellingShingle | Hung Hui Chung Asmeralda Ai Leen Soh Melinda Mei Lin Lau Han Ming Gan Siong Fong Sim Leonard Whye Kit Lim The first engkabang jantong (Rubroshorea macrophylla) genome survey dataNCBI GenBank Data in Brief Engkabang jantong Rubroshorea macrophylla Genomic landscape Microsatellite Illumina |
| title | The first engkabang jantong (Rubroshorea macrophylla) genome survey dataNCBI GenBank |
| title_full | The first engkabang jantong (Rubroshorea macrophylla) genome survey dataNCBI GenBank |
| title_fullStr | The first engkabang jantong (Rubroshorea macrophylla) genome survey dataNCBI GenBank |
| title_full_unstemmed | The first engkabang jantong (Rubroshorea macrophylla) genome survey dataNCBI GenBank |
| title_short | The first engkabang jantong (Rubroshorea macrophylla) genome survey dataNCBI GenBank |
| title_sort | first engkabang jantong rubroshorea macrophylla genome survey datancbi genbank |
| topic | Engkabang jantong Rubroshorea macrophylla Genomic landscape Microsatellite Illumina |
| url | http://www.sciencedirect.com/science/article/pii/S2352340924012101 |
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