On the ability to extract MLVA profiles of Vibrio cholerae isolates from WGS data generated with Oxford Nanopore Technologies

On the ability to extract MLVA profiles of Vibrio cholerae isolates from WGS data generated with Oxford Nanopore Technologies

Abstract Objective Multiple-Locus Variable Number of Tandem Repeats (VNTR) Analysis (MLVA) is widely used to subtype pathogens causing foodborne and waterborne disease outbreaks. The MLVAType shiny application was previously designed to extract MLVA profiles of Vibrio cholerae isolates from whole-ge...

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Bibliographic Details
Main Authors: Jérôme Ambroise, Bertrand Bearzatto, Jean-Francois Durant, Leonid M. Irenge, Jean-Luc Gala
Format: Article
Language:English
Published: BMC 2025-01-01
Series:BMC Research Notes
Subjects:
In silico MLVA profiles
Sequencing
Nanopore
Long reads
WGS
Online Access:https://doi.org/10.1186/s13104-025-07093-7
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