ASF Shiny app: An interactive web application for exploring premovement active surveillance scenarios for early African Swine Fever detection
African Swine Fever (ASF) is a deadly, viral, swine disease with serious socio-economic impacts across the globe. Developing effective active surveillance strategies is critical, given the relatively long herd level incubation period for ASF. We developed an interactive web application that interfac...
Saved in:
| Main Authors: | , , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2025-05-01
|
| Series: | SoftwareX |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S235271102500072X |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1850109278920114176 |
|---|---|
| author | Sasidhar Malladi Peter J. Bonney Sylvia Wanzala Martin Amos Ssematimba Kaitlyn M. St. Charles Kathleen C. O'Hara Marta D. Remmenga Michelle Leonard Holden C. Hutchinson Cesar A. Corzo Marie R. Culhane |
| author_facet | Sasidhar Malladi Peter J. Bonney Sylvia Wanzala Martin Amos Ssematimba Kaitlyn M. St. Charles Kathleen C. O'Hara Marta D. Remmenga Michelle Leonard Holden C. Hutchinson Cesar A. Corzo Marie R. Culhane |
| author_sort | Sasidhar Malladi |
| collection | DOAJ |
| description | African Swine Fever (ASF) is a deadly, viral, swine disease with serious socio-economic impacts across the globe. Developing effective active surveillance strategies is critical, given the relatively long herd level incubation period for ASF. We developed an interactive web application that interfaces with a heterogeneous within-herd disease transmission model and enables rapid exploration of various ASF transmission scenarios and premovement surveillance options for finisher swine herds. The application demonstrates the effects of various surveillance design aspects and illustrates the benefit of an enhanced targeted biosecurity interval before movement. Developing such interactive tools can help translate complex mathematical models, and advance communication of ASF risk and surveillance strategies. |
| format | Article |
| id | doaj-art-2fcae6d1a49f4832902c4e041e9f1ec5 |
| institution | OA Journals |
| issn | 2352-7110 |
| language | English |
| publishDate | 2025-05-01 |
| publisher | Elsevier |
| record_format | Article |
| series | SoftwareX |
| spelling | doaj-art-2fcae6d1a49f4832902c4e041e9f1ec52025-08-20T02:38:06ZengElsevierSoftwareX2352-71102025-05-013010210510.1016/j.softx.2025.102105ASF Shiny app: An interactive web application for exploring premovement active surveillance scenarios for early African Swine Fever detectionSasidhar Malladi0Peter J. Bonney1Sylvia Wanzala Martin2Amos Ssematimba3Kaitlyn M. St. Charles4Kathleen C. O'Hara5Marta D. Remmenga6Michelle Leonard7Holden C. Hutchinson8Cesar A. Corzo9Marie R. Culhane10Secure Food Systems Team, University of Minnesota, St. Paul, MN 55108, USA; US Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, Strategy and Policy, Center for Epidemiology and Animal Health, Fort Collins, CO, USA; Corresponding author.Secure Food Systems Team, University of Minnesota, St. Paul, MN 55108, USASecure Food Systems Team, University of Minnesota, St. Paul, MN 55108, USASecure Food Systems Team, University of Minnesota, St. Paul, MN 55108, USA; Department of Mathematics, Faculty of Science, Gulu University, Gulu, UgandaSecure Food Systems Team, University of Minnesota, St. Paul, MN 55108, USAUS Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, Strategy and Policy, Center for Epidemiology and Animal Health, Fort Collins, CO, USAUS Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, Strategy and Policy, Center for Epidemiology and Animal Health, Fort Collins, CO, USASecure Food Systems Team, University of Minnesota, St. Paul, MN 55108, USAUS Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, Strategy and Policy, Center for Epidemiology and Animal Health, Fort Collins, CO, USASecure Food Systems Team, University of Minnesota, St. Paul, MN 55108, USASecure Food Systems Team, University of Minnesota, St. Paul, MN 55108, USAAfrican Swine Fever (ASF) is a deadly, viral, swine disease with serious socio-economic impacts across the globe. Developing effective active surveillance strategies is critical, given the relatively long herd level incubation period for ASF. We developed an interactive web application that interfaces with a heterogeneous within-herd disease transmission model and enables rapid exploration of various ASF transmission scenarios and premovement surveillance options for finisher swine herds. The application demonstrates the effects of various surveillance design aspects and illustrates the benefit of an enhanced targeted biosecurity interval before movement. Developing such interactive tools can help translate complex mathematical models, and advance communication of ASF risk and surveillance strategies.http://www.sciencedirect.com/science/article/pii/S235271102500072XAfrican Swine FeverDisease transmission dynamicsActive surveillanceSimulation modelsR Shiny |
| spellingShingle | Sasidhar Malladi Peter J. Bonney Sylvia Wanzala Martin Amos Ssematimba Kaitlyn M. St. Charles Kathleen C. O'Hara Marta D. Remmenga Michelle Leonard Holden C. Hutchinson Cesar A. Corzo Marie R. Culhane ASF Shiny app: An interactive web application for exploring premovement active surveillance scenarios for early African Swine Fever detection SoftwareX African Swine Fever Disease transmission dynamics Active surveillance Simulation models R Shiny |
| title | ASF Shiny app: An interactive web application for exploring premovement active surveillance scenarios for early African Swine Fever detection |
| title_full | ASF Shiny app: An interactive web application for exploring premovement active surveillance scenarios for early African Swine Fever detection |
| title_fullStr | ASF Shiny app: An interactive web application for exploring premovement active surveillance scenarios for early African Swine Fever detection |
| title_full_unstemmed | ASF Shiny app: An interactive web application for exploring premovement active surveillance scenarios for early African Swine Fever detection |
| title_short | ASF Shiny app: An interactive web application for exploring premovement active surveillance scenarios for early African Swine Fever detection |
| title_sort | asf shiny app an interactive web application for exploring premovement active surveillance scenarios for early african swine fever detection |
| topic | African Swine Fever Disease transmission dynamics Active surveillance Simulation models R Shiny |
| url | http://www.sciencedirect.com/science/article/pii/S235271102500072X |
| work_keys_str_mv | AT sasidharmalladi asfshinyappaninteractivewebapplicationforexploringpremovementactivesurveillancescenariosforearlyafricanswinefeverdetection AT peterjbonney asfshinyappaninteractivewebapplicationforexploringpremovementactivesurveillancescenariosforearlyafricanswinefeverdetection AT sylviawanzalamartin asfshinyappaninteractivewebapplicationforexploringpremovementactivesurveillancescenariosforearlyafricanswinefeverdetection AT amosssematimba asfshinyappaninteractivewebapplicationforexploringpremovementactivesurveillancescenariosforearlyafricanswinefeverdetection AT kaitlynmstcharles asfshinyappaninteractivewebapplicationforexploringpremovementactivesurveillancescenariosforearlyafricanswinefeverdetection AT kathleencohara asfshinyappaninteractivewebapplicationforexploringpremovementactivesurveillancescenariosforearlyafricanswinefeverdetection AT martadremmenga asfshinyappaninteractivewebapplicationforexploringpremovementactivesurveillancescenariosforearlyafricanswinefeverdetection AT michelleleonard asfshinyappaninteractivewebapplicationforexploringpremovementactivesurveillancescenariosforearlyafricanswinefeverdetection AT holdenchutchinson asfshinyappaninteractivewebapplicationforexploringpremovementactivesurveillancescenariosforearlyafricanswinefeverdetection AT cesaracorzo asfshinyappaninteractivewebapplicationforexploringpremovementactivesurveillancescenariosforearlyafricanswinefeverdetection AT marierculhane asfshinyappaninteractivewebapplicationforexploringpremovementactivesurveillancescenariosforearlyafricanswinefeverdetection |