Characterization of single nucleotide polymorphisms in chloroplast genomes of Musaceae Juss.
Musaceae Juss., also called the bananas and plantains family contains essential food crops with critical economic value and nutritional and medicinal properties. In this study, complete chloroplast genomes of 55 species of Musaceae, including all three genera of Musa, Musella, and Ensete, were used...
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Can Tho University Publisher
2023-11-01
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| Series: | CTU Journal of Innovation and Sustainable Development |
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| Online Access: | http://web2010.thanhtoan/index.php/ctujs/article/view/614 |
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| author | Bao Ngoc Mach Hoang Dang Khoa Do |
| author_facet | Bao Ngoc Mach Hoang Dang Khoa Do |
| author_sort | Bao Ngoc Mach |
| collection | DOAJ |
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Musaceae Juss., also called the bananas and plantains family contains essential food crops with critical economic value and nutritional and medicinal properties. In this study, complete chloroplast genomes of 55 species of Musaceae, including all three genera of Musa, Musella, and Ensete, were used to characterize single nucleotide polymorphisms. Also, nucleotide diversity among surveyed species was observed. The results showed regions of high genetic variability in the chloroplast genome and genes carrying multiple single-nucleotide polymorphisms specific for species and genera, such as ycf1, ycf2, ndhF, matK, accD, infA, and petL. A biased nucleotide conversion toward G, C, and T suggests a trend in the evolution of the Musaceae chloroplast genomes. Phylogenetic analysis revealed a close relationship between Ensete and Musella genera and confirmed the existence of two clades in the genus Musa. This study summarizes nucleotide diversity, focusing on single-nucleotide polymorphisms, which are helpful for further studies on population genetics and developing molecular markers in Musaceae.
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| format | Article |
| id | doaj-art-2e998e73c6f04842bab0da12f375c7be |
| institution | DOAJ |
| issn | 2588-1418 2815-6412 |
| language | English |
| publishDate | 2023-11-01 |
| publisher | Can Tho University Publisher |
| record_format | Article |
| series | CTU Journal of Innovation and Sustainable Development |
| spelling | doaj-art-2e998e73c6f04842bab0da12f375c7be2025-08-20T03:19:57ZengCan Tho University PublisherCTU Journal of Innovation and Sustainable Development2588-14182815-64122023-11-01153Characterization of single nucleotide polymorphisms in chloroplast genomes of Musaceae Juss.Bao Ngoc MachHoang Dang Khoa Do0a:1:{s:5:"en_US";s:50:"NTT Hi-Tech Institute, Nguyen Tat Thanh university";} Musaceae Juss., also called the bananas and plantains family contains essential food crops with critical economic value and nutritional and medicinal properties. In this study, complete chloroplast genomes of 55 species of Musaceae, including all three genera of Musa, Musella, and Ensete, were used to characterize single nucleotide polymorphisms. Also, nucleotide diversity among surveyed species was observed. The results showed regions of high genetic variability in the chloroplast genome and genes carrying multiple single-nucleotide polymorphisms specific for species and genera, such as ycf1, ycf2, ndhF, matK, accD, infA, and petL. A biased nucleotide conversion toward G, C, and T suggests a trend in the evolution of the Musaceae chloroplast genomes. Phylogenetic analysis revealed a close relationship between Ensete and Musella genera and confirmed the existence of two clades in the genus Musa. This study summarizes nucleotide diversity, focusing on single-nucleotide polymorphisms, which are helpful for further studies on population genetics and developing molecular markers in Musaceae. http://web2010.thanhtoan/index.php/ctujs/article/view/614Chloroplast genomeMusaceaenucleotide diversityphylogenetic analysisSNPs |
| spellingShingle | Bao Ngoc Mach Hoang Dang Khoa Do Characterization of single nucleotide polymorphisms in chloroplast genomes of Musaceae Juss. CTU Journal of Innovation and Sustainable Development Chloroplast genome Musaceae nucleotide diversity phylogenetic analysis SNPs |
| title | Characterization of single nucleotide polymorphisms in chloroplast genomes of Musaceae Juss. |
| title_full | Characterization of single nucleotide polymorphisms in chloroplast genomes of Musaceae Juss. |
| title_fullStr | Characterization of single nucleotide polymorphisms in chloroplast genomes of Musaceae Juss. |
| title_full_unstemmed | Characterization of single nucleotide polymorphisms in chloroplast genomes of Musaceae Juss. |
| title_short | Characterization of single nucleotide polymorphisms in chloroplast genomes of Musaceae Juss. |
| title_sort | characterization of single nucleotide polymorphisms in chloroplast genomes of musaceae juss |
| topic | Chloroplast genome Musaceae nucleotide diversity phylogenetic analysis SNPs |
| url | http://web2010.thanhtoan/index.php/ctujs/article/view/614 |
| work_keys_str_mv | AT baongocmach characterizationofsinglenucleotidepolymorphismsinchloroplastgenomesofmusaceaejuss AT hoangdangkhoado characterizationofsinglenucleotidepolymorphismsinchloroplastgenomesofmusaceaejuss |