Genome-Wide Analysis of the Multidrug and Toxic Compound Extrusion Gene Family in the Tea Plant
The multidrug and toxic compound extrusion (MATE) family is the latest class of novel secondary transporters discovered in plants. However, there is currently no comprehensive analysis of the <i>MATE</i> gene family in the tea plant. In this study, 68 <i>CsMATE</i> genes were...
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2024-11-01
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| author | Tao Xie Yumei Qian Deyan Wang Xiadong Yan Ying Jiang Min Li Hao Rong Tao Xia |
| author_facet | Tao Xie Yumei Qian Deyan Wang Xiadong Yan Ying Jiang Min Li Hao Rong Tao Xia |
| author_sort | Tao Xie |
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| description | The multidrug and toxic compound extrusion (MATE) family is the latest class of novel secondary transporters discovered in plants. However, there is currently no comprehensive analysis of the <i>MATE</i> gene family in the tea plant. In this study, 68 <i>CsMATE</i> genes were identified from the tea plant genome using bioinformatic methods. In general, we analyzed the evolutionary relationships, intron–exon structure, distribution in chromosomes, conserved domains, and gene expression patterns in different tissues and stresses of the <i>CsMATE</i> gene family. The 68 CsMATEs were phylogenetically divided into four major clusters (Class I to Class IV). The <i>CsMATE</i> genes within the same class exhibit similar structural features, while displaying certain distinctions across different classes. Evolutionary analysis indicated that the <i>CsMATE</i> gene family expanded mainly through gene duplication events, in addition to proximal duplication. Through the analysis of <i>cis</i>-acting elements, it was found that <i>CsMATE</i> genes may be involved in the growth, development, and stress response. Furthermore, we observed that certain <i>CsMATE</i> genes could be induced to exhibit expression under abiotic stress conditions such as low temperature, high salinity (NaCl), osmotic stress (PEG), and methyl jasmonate treatment (MeJA). The findings presented herein offer a crucial theoretical foundation for elucidating the biological functions of <i>CsMATE</i> genes, particularly in response to abiotic stress, and furnish valuable potential genetic resources for tea plant resistance breeding. |
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| spelling | doaj-art-2cfbbe00514443a69e32280d3aea86f82025-08-20T02:26:52ZengMDPI AGAgronomy2073-43952024-11-011411271810.3390/agronomy14112718Genome-Wide Analysis of the Multidrug and Toxic Compound Extrusion Gene Family in the Tea PlantTao Xie0Yumei Qian1Deyan Wang2Xiadong Yan3Ying Jiang4Min Li5Hao Rong6Tao Xia7Key Laboratory of Spin Electron and Nanomaterials of Anhui Higher Education Institutes, School of Biology and Food Engineering, Suzhou University, Suzhou 234000, ChinaKey Laboratory of Spin Electron and Nanomaterials of Anhui Higher Education Institutes, School of Biology and Food Engineering, Suzhou University, Suzhou 234000, ChinaKey Laboratory of Spin Electron and Nanomaterials of Anhui Higher Education Institutes, School of Biology and Food Engineering, Suzhou University, Suzhou 234000, ChinaKey Laboratory of Spin Electron and Nanomaterials of Anhui Higher Education Institutes, School of Biology and Food Engineering, Suzhou University, Suzhou 234000, ChinaKey Laboratory of Spin Electron and Nanomaterials of Anhui Higher Education Institutes, School of Biology and Food Engineering, Suzhou University, Suzhou 234000, ChinaKey Laboratory of Spin Electron and Nanomaterials of Anhui Higher Education Institutes, School of Biology and Food Engineering, Suzhou University, Suzhou 234000, ChinaKey Laboratory of Spin Electron and Nanomaterials of Anhui Higher Education Institutes, School of Biology and Food Engineering, Suzhou University, Suzhou 234000, ChinaState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei 230036, ChinaThe multidrug and toxic compound extrusion (MATE) family is the latest class of novel secondary transporters discovered in plants. However, there is currently no comprehensive analysis of the <i>MATE</i> gene family in the tea plant. In this study, 68 <i>CsMATE</i> genes were identified from the tea plant genome using bioinformatic methods. In general, we analyzed the evolutionary relationships, intron–exon structure, distribution in chromosomes, conserved domains, and gene expression patterns in different tissues and stresses of the <i>CsMATE</i> gene family. The 68 CsMATEs were phylogenetically divided into four major clusters (Class I to Class IV). The <i>CsMATE</i> genes within the same class exhibit similar structural features, while displaying certain distinctions across different classes. Evolutionary analysis indicated that the <i>CsMATE</i> gene family expanded mainly through gene duplication events, in addition to proximal duplication. Through the analysis of <i>cis</i>-acting elements, it was found that <i>CsMATE</i> genes may be involved in the growth, development, and stress response. Furthermore, we observed that certain <i>CsMATE</i> genes could be induced to exhibit expression under abiotic stress conditions such as low temperature, high salinity (NaCl), osmotic stress (PEG), and methyl jasmonate treatment (MeJA). The findings presented herein offer a crucial theoretical foundation for elucidating the biological functions of <i>CsMATE</i> genes, particularly in response to abiotic stress, and furnish valuable potential genetic resources for tea plant resistance breeding.https://www.mdpi.com/2073-4395/14/11/2718multidrug and toxic compound extrusiontea plantgenome-wide analysisgene expression patternstress responses |
| spellingShingle | Tao Xie Yumei Qian Deyan Wang Xiadong Yan Ying Jiang Min Li Hao Rong Tao Xia Genome-Wide Analysis of the Multidrug and Toxic Compound Extrusion Gene Family in the Tea Plant Agronomy multidrug and toxic compound extrusion tea plant genome-wide analysis gene expression pattern stress responses |
| title | Genome-Wide Analysis of the Multidrug and Toxic Compound Extrusion Gene Family in the Tea Plant |
| title_full | Genome-Wide Analysis of the Multidrug and Toxic Compound Extrusion Gene Family in the Tea Plant |
| title_fullStr | Genome-Wide Analysis of the Multidrug and Toxic Compound Extrusion Gene Family in the Tea Plant |
| title_full_unstemmed | Genome-Wide Analysis of the Multidrug and Toxic Compound Extrusion Gene Family in the Tea Plant |
| title_short | Genome-Wide Analysis of the Multidrug and Toxic Compound Extrusion Gene Family in the Tea Plant |
| title_sort | genome wide analysis of the multidrug and toxic compound extrusion gene family in the tea plant |
| topic | multidrug and toxic compound extrusion tea plant genome-wide analysis gene expression pattern stress responses |
| url | https://www.mdpi.com/2073-4395/14/11/2718 |
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