Whole genome and transcriptome analyses identify genetic markers associated with growth traits in Qinchuan black pig

Whole genome and transcriptome analyses identify genetic markers associated with growth traits in Qinchuan black pig

Abstract Background Growth traits are economically important traits in pig breeding. However, the genetic mechanism of growth traits is still unclear. Qinchuan Black (QCB) pigs are crossbred and produced by hybridizing Guanzhong Black (GZB) pigs and Large White (LW) pigs, its characteristics include...

Full description

Saved in:

Bibliographic Details
Main Authors:	Yaxin Wang, Guangquan Lv, Zhe Liu, Ye Cheng, Rongrong Ding, Gongshe Yang, Taiyong Yu
Format:	Article
Language:	English
Published:	BMC 2025-05-01
Series:	BMC Genomics
Subjects:	Qinchuan black pig Selection signal analysis Genome-wide association studies Differential expression analysis Growth traits Candidate genes
Online Access:	https://doi.org/10.1186/s12864-025-11627-5
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Comparative analysis of the whole transcriptome landscapes of muscle and adipose tissue in Qinchuan beef cattle
by: Ju Qiu, et al.
Published: (2025-01-01)

Integrating parental genomes to reduce reference bias and identify intramuscular fat genes in Qinchuan Black pigs
by: Guangquan Lv, et al.
Published: (2025-07-01)

Peony seed meal supplementation enhances semen quality in aged Qinchuan bulls
by: Shaojie Cao, et al.
Published: (2025-12-01)

Molecular cloning of TPM3 gene in qinchuan cattle and its effect on myoblast proliferation and differentiation
by: Juntao Guo, et al.
Published: (2024-12-01)

Screening of molecular markers associated with hornless traits in Qira black sheep
by: Wen Zhou, et al.
Published: (2025-05-01)

Gender and age-related variations in rumen fermentation and microbiota of Qinchuan cattle
by: Yueting Pan, et al.
Published: (2025-05-01)

Sex-specific microbiota associations with backfat thickness, eye muscle area, and rumen fermentation in Qinchuan cattle
by: Yueting Pan, et al.
Published: (2025-05-01)

Whole-genome selective sweep analysis of Danish Large White and Chinese indigenous pig populations
by: Xudong Wu, et al.
Published: (2025-12-01)

Mechanism of the Effect of Protein DJ-1 on Changes in the Meat Quality of Qinchuan Cattle during Postmortem Aging
by: ZHANG Jing, ZHAO Wenxiu, SI Jianfang, CAO Songmin, LI Yalei, LUO Ruiming
Published: (2024-11-01)

Effects of Acorns on Subcutaneous Fat Deposition in Yuxi Black Pigs by Transcriptomic Analysis
by: Zhe Sun, et al.
Published: (2025-01-01)

Integrated Analysis Reveals Genetic Basis of Growth Curve Parameters in an F<sub>2</sub> Designed Pig Population Based on Genome and Transcriptome Data
by: Zhaoxuan Che, et al.
Published: (2024-09-01)

Combined metabolome and transcriptome analysis provides molecular insights into reproductive process in Chuanxiang Black and Landrace pigs
by: Jiangling Li, et al.
Published: (2025-02-01)

Genome-Wide Association Study and Phenotype Prediction of Reproductive Traits in Large White Pigs
by: Hao Zhang, et al.
Published: (2024-11-01)

Insights into high-altitude adaptation and meat quality regulation by gastrointestinal metabolites in Tibetan and black pigs
by: Xue Bai, et al.
Published: (2025-03-01)

Effects of Acorns on Fatty Acid Composition and Lipid Metabolism in Adipose Tissue of Yuxi Black Pigs
by: Zhe Sun, et al.
Published: (2024-11-01)

Transcriptome and Metabolome Insights into Key Genes Regulating Fat Deposition and Meat Quality in Pig Breeds
by: Suthar Teerath Kumar, et al.
Published: (2024-12-01)

Genome-wide analysis of genetic loci and candidate genes related to teat number traits in Dongliao black pigs
by: Juan Ke, et al.
Published: (2025-05-01)

Black soldier fly as a target for pig feed production
by: Bogolyubova Yu.A., et al.
Published: (2024-12-01)

Genome-wide detection of selective signatures in a Jinhua pig population
by: Zhong XU, et al.
Published: (2020-05-01)

Large-scale integration of meta-QTL and genome-wide association study identifies genomic regions and candidate genes for photosynthetic efficiency traits in bread wheat
by: Ming Chen, et al.
Published: (2025-03-01)

Use of Transcriptomics to Identify Candidate Genes for Hematopoietic Differences Between Wujin and Duroc Pigs
by: Peng Ji, et al.
Published: (2024-12-01)

Integrating eQTL and genome-wide association studies to uncover additive and dominant regulatory circuits in pig uterine capacity
by: Z. Xu, et al.
Published: (2025-08-01)

Genome-wide association study of cocoon-producing traits in four Henan silkworm strains revealed new candidate genes
by: Xingya Song, et al.
Published: (2025-06-01)

Effects of carcass weight, sex and breed composition on meat cuts and carcass trait in finishing pigs
by: Lei XIE, et al.
Published: (2023-05-01)

Effects of increasing dietary lysine and energy levels on growth efficiency, nutrient absorption, and meat carcass traits in growing-finishing pigs
by: Sarbani Biswas, et al.
Published: (2025-01-01)

Benchmarking of feed-forward neural network models for genomic prediction of quantitative traits in pigs
by: Junjian Wang, et al.
Published: (2025-06-01)

Qualitative and quantitative characteristics of black patch trait in Oujiang color common carp
by: Ke Jing, et al.
Published: (2025-03-01)

Effects of digested pig slurry application on agronomic trait, yield and forage quality of indica rice
by: HOU Fuyin, et al.
Published: (2019-06-01)

Unravelling novel and closely linked association signals for fat-related traits in pigs using prioritised variants from whole-genome sequence data
by: E. Molinero, et al.
Published: (2025-05-01)

Effects of Flavonoids in <i>Fructus Aurantii Immaturus</i> on Carcass Traits, Meat Quality and Antioxidant Capacity in Finishing Pigs
by: Zekun Yang, et al.
Published: (2024-11-01)

Transcriptomic analysis of muscle and adipose tissues identifies myokines and adipokines contributing to lipid deposition in Taoyuan Black pigs
by: Liu Guo, et al.
Published: (2025-06-01)

Genome wide linkage mapping for black point resistance in a recombinant inbred line population of Zhongmai 578 and Jimai 22
by: Tiantian Chen, et al.
Published: (2025-09-01)

PolyA polymorphisms in 3' flanking region of pig neuronal protein 3.1 gene and their relationships with meat traits
by: Yang Yun, et al.
Published: (2015-03-01)

Production properties of the Black Slavonian pig breed
by: Marija UREMOVIĆ, et al.
Published: (2000-11-01)

Transcriptome-wide association studies identify candidate genes for carcass and meat traits in meat rabbits
by: Hua He, et al.
Published: (2024-12-01)

Genome-wide dissection of genes shaping inflorescence morphology in 242 Chinese south–north sorghum accessions
by: Guihua Zou, et al.
Published: (2024-10-01)

Exploring genetic loci linked to COVID-19 severity and immune response through multi-trait GWAS analyses
by: Ziang Meng, et al.
Published: (2025-02-01)

Meta-analysis of muscle transcriptome data identifies key genes influencing intramuscular fat content in pigs
by: Yan Wang, et al.
Published: (2025-08-01)

Dynamic Changes in Metabolites and Transformation Pathways in Diqing Tibetan Pig Hams During Fermentation Determined by Widely Targeted Metabolomic Analysis
by: Dan Jia, et al.
Published: (2025-07-01)

Causal Associations Between Sleep Traits and Delirium: A Bidirectional Two-Sample Mendelian Randomization Study
by: Liu H, et al.
Published: (2024-12-01)